BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0730.p
         (148 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093711|ref|YP_001098786.1| hypothetical protein HEAR0440 [...   217   2e-58

>gi|134093711|ref|YP_001098786.1| hypothetical protein HEAR0440
           [Herminiimonas arsenicoxydans]
          Length = 149

 Score =  217 bits (553), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 136/146 (93%)

Query: 1   MGLKEQITEDMKAAMRAKDMGKLGTIRLLTAAMKQKEVDERVELTDTHVLAIIDKMVKQR 60
           M LKEQITEDMK+AMRAK+ GKLGTIRL+T+A+KQKEVDER+EL+DT VLAII+KM+KQR
Sbjct: 1   MSLKEQITEDMKSAMRAKEAGKLGTIRLITSAIKQKEVDERIELSDTQVLAIIEKMIKQR 60

Query: 61  KDSISQFEAGGRQDLADIEKAELAVLTTYMPASLSEEEIKAEVQAAVAATGAAGPQDMGK 120
           KDSISQF+AGGRQDL DIE+AEL+VLTTYMP++LS+ E++ EV AAVAA+GAAGPQDMGK
Sbjct: 61  KDSISQFQAGGRQDLVDIEEAELSVLTTYMPSALSDAEVQGEVAAAVAASGAAGPQDMGK 120

Query: 121 VMGVLKPKLAGRADMTAVSALVKAAL 146
           VM +LK KLAGRADMTAVS LVKAAL
Sbjct: 121 VMAILKAKLAGRADMTAVSGLVKAAL 146


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.126    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 190,692
Number of extensions: 5496
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 74
Effective length of database: 756,517
Effective search space: 55982258
Effective search space used: 55982258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)