BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0727.p
         (370 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095690|ref|YP_001100765.1| carboxylate-amine ligase [Hermi...   380   e-107

>gi|134095690|ref|YP_001100765.1| carboxylate-amine ligase
           [Herminiimonas arsenicoxydans]
          Length = 370

 Score =  380 bits (975), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/363 (51%), Positives = 239/363 (65%), Gaps = 4/363 (1%)

Query: 1   MGIELELQLVNRRNYNLASDAVDLLNWIEPRDLQKQIKLEMTQGMIELNSGIHTRVDELI 60
           MG+ELELQ+VNRR+YNL   + DLL  I   +    IK E+T+ MIE+ + +HT   E++
Sbjct: 12  MGVELELQIVNRRDYNLTRGSDDLLQIINKTEHGYDIKPEITESMIEIATAVHTDHVEML 71

Query: 61  EELKGLRAALNKGAQYLNIDVSGGGAHPFQHWNEQRITPSERFHYLHEKYGYLAKTFTVF 120
            EL  +R  L   A  LN+ ++GGGAHPFQHW +QRI P++R+  + E YGYLAK FTV+
Sbjct: 72  AELTAMRTLLVTAANKLNLGLAGGGAHPFQHWEDQRIYPTDRYRLVSELYGYLAKQFTVY 131

Query: 121 GQHIHIGVENGDDALYLTHGFSRYVPHFIALSAASPFYQGADTKFDSSRSNVVRAFPLSG 180
           GQHIHIG  +GDDA+ LTH  +R +PHFIALSA+SPFYQG DT F SSR   + AFPLSG
Sbjct: 132 GQHIHIGCASGDDAIRLTHLLARQIPHFIALSASSPFYQGVDTSFQSSRLTSINAFPLSG 191

Query: 181 TAPVHTKWAEFETYYDELHQMGIIASMKDFYWDIRPKPEYGTVEIRVCDTPLTIEHAAHL 240
           T P  + W  F TY+ ++  +GI+ASMKDFYWDIRPKPEYGTVEIRVCDTPL IE A  L
Sbjct: 192 TMPFVSDWEAFNTYFIKMSHLGIVASMKDFYWDIRPKPEYGTVEIRVCDTPLAIETAVAL 251

Query: 241 GAYAQLLARWILTERPFVVADDFYLLYQYNRFEASRFGLNGQLALHGATPSQSRKLPIYE 300
           GAYAQ L+++           D YL Y YNRF+A RFGLNG L ++  T +QS    I +
Sbjct: 252 GAYAQTLSKYYFAHTELEPTQDTYLTYSYNRFQACRFGLNGAL-INPITGTQS---SIKD 307

Query: 301 HLLQQLQLLEPYVANEAERQTILRLRRIAHDRLSDASWLRQMFAQRGSLNDMMRLSSELW 360
            +LQ  +LL+           I  LR+      SDA WLR  + + GSL+D +R  S +W
Sbjct: 308 DILQTFELLKDVAEELGTTDAIELLRQRVLSGQSDADWLRASYEKSGSLSDAVRQQSAVW 367

Query: 361 MGV 363
           M  
Sbjct: 368 MAT 370


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 747,046
Number of extensions: 31035
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 287
Effective length of database: 726,862
Effective search space: 208609394
Effective search space used: 208609394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)