BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0724.p
         (919 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093953|ref|YP_001099028.1| hypothetical protein HEAR0707 [...   877   0.0  

>gi|134093953|ref|YP_001099028.1| hypothetical protein HEAR0707
           [Herminiimonas arsenicoxydans]
          Length = 854

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/874 (53%), Positives = 591/874 (67%), Gaps = 23/874 (2%)

Query: 48  LMVPAFSHAQNFKAALARQLRRPYIAPRINTLSGLLAMQAPGETAPPSESERLMQLYAQL 107
           ++V  F+H Q  K ALARQ+   +I P + +LS  +    P      + SERLM LYA L
Sbjct: 1   MLVSTFAHIQLLKNALARQIDGAFIPPTMTSLSEYIRQLPPDGATATAASERLMSLYADL 60

Query: 108 REHGWLKKMFSARRNADLLPLAHTLLALSDELTLALLPEIRASASGQEAAVGRWAQALAQ 167
           R+H WLKK+FSARRN DLLPLA  LLALSDELT A+LP ++AS    +A   RW  AL Q
Sbjct: 61  RQHAWLKKLFSARRNTDLLPLAEILLALSDELTQAMLPSLKASP---DAGYARWQAALEQ 117

Query: 168 LLEPLAPSAHGMLSDEAALVWQVWKTQLDANDRIVQRFDAMLALAEQASL---PLVWVSP 224
           L    +P A  +LSDE  LVW +WK+QLDA+D  V R+  M+ L +Q      PL W+SP
Sbjct: 118 L----SPVARNLLSDETQLVWTIWKSQLDASDANVIRYAQMMRLVQQVEHIQQPLFWISP 173

Query: 225 TEPEPLEAAFLAAYAQRQPVRIVTLDWSRPAIAPLHPIYLSAWEELARDDEGIAAADADN 284
             P+ +E AFL AY  RQ + ++TLDW   ++   H  Y +AW E+  D+   AA     
Sbjct: 174 VAPDAMEQAFLDAYGARQALTVLTLDWHAHSV---HSTYAAAWPEMLVDEMDSAAL---- 226

Query: 285 VRTVTTDVTLPLLCPADDLEIAAVQSAQIVLRWLGEGKNDIAIVAQDRVTARRLRALLER 344
             ++ T   L L   A ++E  A   AQ V+ WL +GK +IAIVAQDRV ARR+RALLER
Sbjct: 227 --SLATPPGLKLHA-AQNMEAEARAGAQTVIDWLQQGKTNIAIVAQDRVVARRIRALLER 283

Query: 345 AEVAVADETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPDDHARSERVMR 404
           A++ VADETGWKLSTTRAA+A+AAW +LV+AR ET  LLD LKSPFVF D   ++E VM 
Sbjct: 284 AQIVVADETGWKLSTTRAASAIAAWLELVAARAETVGLLDFLKSPFVFADMADKAELVMV 343

Query: 405 IETRLRRTNIAGDWQALQSAFAEAGQADELACIIMLAKQAARFTGRKTLAQWCETQRGLC 464
            E  L+R  +   W+A+  A   A  A ++  + +LA+QAA FTGRKTL +W    + + 
Sbjct: 344 SEIALQRAKVLSGWEAVSDALTAAPAAQKM--MTLLAQQAAGFTGRKTLCEWIAATQQML 401

Query: 465 RALGMEAALRADGAGEQCLLMLDDIAAEQGGLSDTFSFAEWRALLNLRLDATSYMPPIKD 524
             LGM  AL+AD AG Q L +L D+A +   +  TFSFAEWRA LNL+L+A +++   +D
Sbjct: 402 VTLGMRDALQADAAGAQLLQLLQDVAQDCVQVGHTFSFAEWRAFLNLQLEAKAFVQVNQD 461

Query: 525 RRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLTTRAVRQRQQL 584
           +RVVMLPLNGARLR FDAVL++GADA HLPS P ETLFF+N VRREL L TR  RQRQQL
Sbjct: 462 KRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPMETLFFANVVRRELGLATRESRQRQQL 521

Query: 585 RDLTELLCVNPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLRRVVLPPPVKQLR 644
           RD+TELL  N  VVL WQ H++GEPNPVSPWIERLEL LA+   APL +  +    + L+
Sbjct: 522 RDVTELLSANDCVVLSWQAHKNGEPNPVSPWIERLELCLARACLAPLAKHEVQIAPRHLQ 581

Query: 645 AQPSSMPAPAAPDLLPASLSASGFGSFLACPYQFFAQRMLRVAVMDELSDTPEKRDYGSW 704
             P  MPAPAAP LLP  LSASG+ S +ACPYQFFA RML ++ +D++SD PEKRDYG W
Sbjct: 582 PTPVLMPAPAAPQLLPQKLSASGYNSLVACPYQFFATRMLGLSGIDDVSDMPEKRDYGDW 641

Query: 705 LHEILYRYHAHLRDQDTPLPARAPLLAQLSEEVFQREMQRHPAALAFHARWQKVMPAYLL 764
           LH+IL ++H  L++   PL  RAPLL Q+S+ +F  E+ +  AAL ++ARWQK MPAYL 
Sbjct: 642 LHKILAQFHQTLQEAPVPLAERAPLLQQISDRIFAHELDKSAAALGYYARWQKAMPAYLE 701

Query: 765 WANEREAEGWRFAFGEQAQSQALRWEDGGIELYGRLDRVDHNDRGERALLDYKTRTAANL 824
           W  ERE++GW F  GE+   + LRWEDG I L+GR+DR+D N  GERA+LDYK+     L
Sbjct: 702 WIAERESQGWHFVLGEEKFEKLLRWEDGEIVLHGRVDRMDENASGERAVLDYKSTNQGAL 761

Query: 825 RQKVKEEDDHQLAFYGLLAGGDVQHAHYVALELGPDKKTGDAAAPDFARKQKMLQQQITT 884
           R K+++ +DHQL FYGLL+G  +  A YV LE   D K  +  APD+   Q+ L++QI  
Sbjct: 762 RDKLRQGEDHQLPFYGLLSGTALSAALYVPLEATRD-KIKEVEAPDYEVWQQNLEEQIVR 820

Query: 885 TMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 918
            MQA+ HGA LPA G E VCQYC++RGLCRKGAW
Sbjct: 821 NMQAITHGAPLPATGPEPVCQYCDVRGLCRKGAW 854


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,503,734
Number of extensions: 54055
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 829
Effective length of database: 703,797
Effective search space: 583447713
Effective search space used: 583447713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)