BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0722.p
         (420 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093951|ref|YP_001099026.1| transcription termination facto...   830   0.0  
gi|134095079|ref|YP_001100154.1| flagellum-specific ATP synthase...    82   7e-17

>gi|134093951|ref|YP_001099026.1| transcription termination factor
           Rho [Herminiimonas arsenicoxydans]
          Length = 421

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/420 (96%), Positives = 415/420 (98%)

Query: 1   MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60
           MHLSELKA+HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
Sbjct: 1   MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60

Query: 61  GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120
           GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
Sbjct: 61  GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120

Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180
           GE PEASKHRILFENLTPLHPNK L LERDMRGEENITGR+IDLIAP+G+GQRGLLVASP
Sbjct: 121 GEAPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRVIDLIAPIGKGQRGLLVASP 180

Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240
           KSGKSV+LQHIAHAITTNHPD VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
Sbjct: 181 KSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240

Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300
           QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360
           FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360

Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420
           +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN
Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420


>gi|134095079|ref|YP_001100154.1| flagellum-specific ATP synthase
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 160 RIIDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEM 219
           R I+ +  VGRGQR  L A    GKSV+L  +A   T +    V++V LI ER  EV E 
Sbjct: 136 RAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTAD----VIVVGLIGERGREVKEF 191

Query: 220 QRSVRGE-------VVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLAR 272
              + G        VVA+  D P    +Q A      A+   +  KDV++++DS+TR A 
Sbjct: 192 IEQILGPEGLARSVVVAAPADTPPLMRLQGAAYTTAIAEHFRDEGKDVLLIMDSLTRYAM 251

Query: 273 AYNTVIPASGK-VLTGGVDANALQR-PKRFFGAARNVEEGGSLTIIATALIETGSRMDDV 330
           A   +  A G+   T G   +   + P     A    E GGS+T   T L E G    D 
Sbjct: 252 AQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTE-GDDQQDP 310

Query: 331 IYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 386
           I +  +   +  + L R LAE   YPAI++ +S +R    +  P+  ++   L++L
Sbjct: 311 IADAARAILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQTRKLKQL 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 786,271
Number of extensions: 32979
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 336
Effective length of database: 723,567
Effective search space: 243118512
Effective search space used: 243118512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)