BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0718.p (700 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 434 e-123 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 373 e-104 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 357 e-100 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 353 2e-98 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 348 4e-97 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 434 bits (1117), Expect = e-123, Method: Compositional matrix adjust. Identities = 266/685 (38%), Positives = 399/685 (58%), Gaps = 25/685 (3%) Query: 2 SASFHFLLLAFALLVASLSAYAALEVSERIVLQDSQHRRLWLAIGAAVF--GVGVWGAML 59 +A + LL+ +LLVA L++Y AL+++ERI +QH+ L + F GVG+W Sbjct: 7 AAHYDTLLVLISLLVAILASYTALDMAERI--NATQHKAAALWLAGGAFAMGVGIWSMHF 64 Query: 60 LTVAALDLTTALAFDARLVMLALLLCL-GSAFYLMHLTGIRRPLPLHLLIGGLSIGAAFN 118 + + + L AL +D L + +L + + S F L ++ P+ + L + L +G A Sbjct: 65 IGMLSFRLPIALGYDLTLTITSLAIAIVASGFALWRISQPTLPV-MQLSVSALLMGVAIA 123 Query: 119 AAFHIVLKSMLLDPPLVYQVPLLLVALVVTEMVAVFIVTLFSASNGRKPMTGSLNSQQAR 178 A + + ++ + P + Y PLL +L + +A L+ A RK + + Sbjct: 124 AMHYTGMAALRMTPGIEYN-PLLF-SLSILIAIAASGAALWIAFTLRK----NRPHMKRA 177 Query: 179 RVLAALLVGAGLVSSAVAGLRAL-----LIDPQAHSGMSGGITREHLVNGLVFLAFLAMA 233 R +AA+++G ++ G+ A I A G+ G LV +V L+ LA+A Sbjct: 178 RAMAAVVMGVAIIGMHYTGMAAANFPLGSICTAASEGIPPGWLA--LVVIIVTLSVLAIA 235 Query: 234 LALVVSGAQ---RNQVLKKIVGRTNDKLLHFATHDVLTGLPNRVLLTDRIQHAIEVARRN 290 L V + + +L K + N +L A D LT LPNR LL DR+ + A R Sbjct: 236 LLTSVLDTRLESQTSLLAKSLAVANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERT 295 Query: 291 GKPFAVLFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRACVRGEDMVARIGGDEFVVVMG 350 FA++F+DLDGFKAINDSLGH +GD LL+ VAQRIR +R +D AR+GGDEFV+++ Sbjct: 296 HTRFALMFIDLDGFKAINDSLGHHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLI- 354 Query: 351 NLSTPVVVEQLSENILMALRQDFQVDDATLCVTSSIGIAVYPNSGETVDMLMKNADAAMY 410 ++ P +++ + + Q F++D TL V++S+GI +YP+ G T L+ NADAAMY Sbjct: 355 EVTEPEDAASVADKLCNIINQPFEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMY 414 Query: 411 EAKQSGRNTYRFFEPAMHASAMRHLQVRQALQQAIAEQQFRLHFQPKYHGASKELTGVEA 470 K +GRN Y FFE +M+A+A LQV Q L+ A+ ++F+LH+QPK++ + + G EA Sbjct: 415 HTKSTGRNGYHFFEASMNANAHNQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEA 474 Query: 471 LLRWRHPDLGEMTPSEFIPIAERSGQILPIGDWVLHAVCTQIARWDAAGMKPVKVALNLS 530 LLRW+HP G + P +FI +AE++G I+PIG+WVL C Q+ W G + KVA+NLS Sbjct: 475 LLRWQHPTRGMIAPDDFIALAEKTGLIVPIGEWVLDEACRQMRIWHDEGNQHWKVAVNLS 534 Query: 531 PLQMRTD-LVESILKVVGATGIAPQRLMFEITETAAMKDVERTTQVVRELQSLGFDIAID 589 +Q D L+E + + L+ E+TE+ AM DVE + ++ +L LG DI+ID Sbjct: 535 AVQFSNDHLIELVQTTLARNNFPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISID 594 Query: 590 DFGTGYSSLAYLAQFHCRQVKIDRFFTSRLDQEDHSGRAIVAAIIALAHALQMEVVAEGV 649 DFGTGYSSL YL + ++KIDR F L Q + +IVAAIIAL +L + +VAEGV Sbjct: 595 DFGTGYSSLLYLKRLPATELKIDRGFIRDLAQGSNDS-SIVAAIIALGRSLNLHIVAEGV 653 Query: 650 ETEGQLRELQLLHCDQVQGFLLGRP 674 ETE Q L++L CD +QG+L+GRP Sbjct: 654 ETEEQQAYLRVLGCDAMQGYLMGRP 678 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/421 (44%), Positives = 278/421 (66%), Gaps = 3/421 (0%) Query: 259 LHFATH-DVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGD 317 L F T+ D LTGL NR L+ DR+ A+ A R G P +LF+DLD FK +ND+LGH GD Sbjct: 505 LEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVNDTLGHQAGD 564 Query: 318 GLLVAVAQRIRACVRGEDMVARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDFQVDD 377 LL AV+ R++A VR D VAR+GGDEFV+++ + + + + I+ ++ Q ++ Sbjct: 565 ILLKAVSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTGIMQRIMESIAQPLTIEG 624 Query: 378 ATLCVTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHLQV 437 ++ SIG+AVYP GET + L+K+AD AMY AK++GRN ++F+ PAM+ A+ L + Sbjct: 625 HEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHI 684 Query: 438 RQALQQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSGQI 497 L+ A+ ++F LH+QP+ S ++ GVEAL+RW+HP+LG + P FI +AE +G I Sbjct: 685 EGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLI 744 Query: 498 LPIGDWVLHAVCTQIARWDAAGMKPVKVALNLSPLQM-RTDLVESILKVVGATGIAPQRL 556 +PIG WV+ C Q W +G +++++NLS Q + DLV+SI + +AP+ L Sbjct: 745 VPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYL 804 Query: 557 MFEITETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRFFT 616 E+TE+ M DV+R ++REL++LG ++IDDFGTGYSSL+YL +F +KIDR F Sbjct: 805 EIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFV 864 Query: 617 SRLDQEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRPAE 676 + + D AIVA++I+LAH+L+++V+AEGVETE QL L+ +CDQ+QG+ RP Sbjct: 865 NDITI-DPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVT 923 Query: 677 A 677 A Sbjct: 924 A 924 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 357 bits (917), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/420 (44%), Positives = 267/420 (63%), Gaps = 6/420 (1%) Query: 256 DKLLHFATHDVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAV 315 + L HF DVLTGLPNR LL +R Q A+ +A + AV+F+DLD FK IND+LGH + Sbjct: 429 ESLAHF---DVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNL 485 Query: 316 GDGLLVAVAQRIRACVRGEDMVARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDFQV 375 GD LLV +AQR+RA +R +D ++R+GGDEFV+++ + +++++ ++ A+ + +++ Sbjct: 486 GDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESA-KKIAQELMRAINEPYRI 544 Query: 376 DDATLCVTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHL 435 L V +SIGIAVYP G + L KNAD AMY AKQ GRN YR F M A + R+L Sbjct: 545 GSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQAYSTRYL 604 Query: 436 QVRQALQQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSG 495 QV AL+QAIA++Q +H+QP+ S ++ G EALLRW HP+LG ++P+EFIPIAE SG Sbjct: 605 QVLNALRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIAEESG 664 Query: 496 QILPIGDWVLHAVCTQIARWDAAGMKPVKVALNLSPLQMR-TDLVESILKVVGATGIAPQ 554 IL IG+WVL Q +W G+ + +A+NLS +Q R L +++++ PQ Sbjct: 665 LILQIGEWVLRVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLVMQILKEEDFPPQ 724 Query: 555 RLMFEITETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRF 614 L E+TE AM D + ++ L G ++IDDFGTGYSSL+YL QF ++KID+ Sbjct: 725 YLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLKIDQS 784 Query: 615 FTSRLDQEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRP 674 F + D +AIV+AII +A L ++ +AEGVET Q L+ C + QG+ +P Sbjct: 785 FVRDIST-DAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYSKP 843 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 353 bits (905), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 182/414 (43%), Positives = 262/414 (63%), Gaps = 3/414 (0%) Query: 262 ATHDVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGDGLLV 321 ATHD LTGLPNR LL DR+Q A+ + R G A+ F+DLD FK INDSLGH VGD LL Sbjct: 287 ATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLK 346 Query: 322 AVAQRIRACVRGEDMVARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDFQVDDATLC 381 AQR+ +C+R D VAR GGDEFV+++ + + + + +L + Q + + Sbjct: 347 ITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHEVAQPWMANGLEFR 406 Query: 382 VTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHLQVRQAL 441 +T S+G+ + P+ G + L+KNAD+AMY+AK+ GRN +++F M+ +A L + L Sbjct: 407 ITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTATDRLALLNRL 466 Query: 442 QQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSGQILPIG 501 +QAI +F LH+QPK + A+ ++ G EAL+RW + G ++P FIP+AE +G I+PIG Sbjct: 467 RQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSAE-GMVSPGSFIPLAEETGLIIPIG 525 Query: 502 DWVLHAVCTQIARWDAAGMKPVKVALNLSPLQM-RTDLVESILKVVGATGIAPQRLMFEI 560 WVL C Q W AG P+ +++NLS Q+ R D+VE + +V+ TG+ Q L EI Sbjct: 526 VWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQYLELEI 585 Query: 561 TETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRFFTSRLD 620 TE+ DVE++ ++ L+ LG I++DDFGTGYSSL+YL +F +KID+ F L Sbjct: 586 TESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDLA 645 Query: 621 QEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRP 674 S AIV AII+L H L + V+AEG+ETE Q + L C++ QG+L+ RP Sbjct: 646 TSQDSA-AIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRP 698 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 348 bits (894), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 297/468 (63%), Gaps = 4/468 (0%) Query: 220 LVNGLVFLAFLAMALALVVSGAQRNQV-LKKIVGRTNDKLLHFATHDVLTGLPNRVLLTD 278 L+ GL+ +A L V++ +++ ++ L + + + L A+HD LTG+PNR L + Sbjct: 125 LLCGLLMIASRQRRLYNVLTASEQEKLNLISQLEQEKSRALLQASHDYLTGVPNRRLFYE 184 Query: 279 RIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRACVRGEDMVA 338 + A+R+ K +A+ F+DLD FK IND+LGHAVGD LL VA+R+R +R D++A Sbjct: 185 MAATELARAKRSRKLYALFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRESLREYDLLA 244 Query: 339 RIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDF-QVDDATLCVTSSIGIAVYPNSGET 397 R+GGDEFV+++ +++ + +++ ++ +R F + + V+ SIGIA+YP G+ Sbjct: 245 RLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGNDIDVSPSIGIALYPRDGQD 304 Query: 398 VDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHLQVRQALQQAIAEQQFRLHFQPK 457 V+ L+ +AD AMY AK +G TYRFF+ +++AS+ R ++ ++AI + +F LH+QP+ Sbjct: 305 VETLLMHADLAMYSAKSAGAATYRFFDTSLNASSARETELLSRFKRAIKDDEFCLHYQPR 364 Query: 458 YHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSGQILPIGDWVLHAVCTQIARWDA 517 + + G+EAL+RW HP+ G + P++FI +AE + I+P+G+WV+ A C Q+A W Sbjct: 365 VELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIVPLGNWVVDAACRQLAVWRG 424 Query: 518 AGMKPVKVALNLSPLQMRTD-LVESILKVVGATGIAPQRLMFEITETAAMKDVERTTQVV 576 G+ V VA+N+S Q++ D L+E+++ + IAP+ L E+TE+ ++D + +QV+ Sbjct: 425 QGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLEIEVTESCFIEDFDAASQVL 484 Query: 577 RELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRFFTSRLDQEDHSGRAIVAAIIAL 636 +LQ G IA+DD+GTG+S L L +KIDR F + + D+S IVA+ I+L Sbjct: 485 EQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIRDI-RNDNSDAVIVASTISL 543 Query: 637 AHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRPAEAPTVPGLI 684 AH L ++VVAEGVE++ QL L+ CDQVQGF RP A + L+ Sbjct: 544 AHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPVAATEIDTLL 591 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,038,808 Number of extensions: 38195 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 34 Length of query: 700 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 612 Effective length of database: 710,387 Effective search space: 434756844 Effective search space used: 434756844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)