BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0716.p
         (151 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093939|ref|YP_001099014.1| hypothetical protein HEAR0693 [...    57   3e-10

>gi|134093939|ref|YP_001099014.1| hypothetical protein HEAR0693
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score = 57.4 bits (137), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 8   FAKRLRAAMEKSGYEPKPAV-LEREFNLRYWGKPMTLHGVRRWLLGESMPKQDKLETLAE 66
           F KRLR A+ +S    + A  L  +F+LRY G  ++     +WL G S+P +DKL TLA 
Sbjct: 10  FTKRLRLALRRSQEAVEGATELAIQFSLRYEGAAISPQTAHKWLSGRSVPTEDKLVTLAN 69

Query: 67  WLIVTPQHLRFGEEIGKR-IDKRRARWEEAIGYREREAF---EAFINLPAPQRKIVKEVI 122
           WL V    L +G    K  +  + A  + ++    +EA    +    LP  QR +++E++
Sbjct: 70  WLNVDKHWLHYGPSPEKSELSAKAAGKKNSVNAPSKEAVTLAQKIQALPPHQRYLIEELV 129

Query: 123 FAF 125
             F
Sbjct: 130 TQF 132


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 261,244
Number of extensions: 10060
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 77
Effective length of database: 756,517
Effective search space: 58251809
Effective search space used: 58251809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)