BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0714.p
         (360 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093698|ref|YP_001098773.1| putative DNA-binding/iron metal...   591   e-170

>gi|134093698|ref|YP_001098773.1| putative DNA-binding/iron
           metalloprotein/AP endonuclease [Herminiimonas
           arsenicoxydans]
          Length = 342

 Score =  591 bits (1524), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/343 (83%), Positives = 314/343 (91%), Gaps = 3/343 (0%)

Query: 1   MLVLGVESSCDETGLALYDTERGLLAHALHSQIAMHQQYGGVVPELASRDHIRRAIPLLK 60
           MLVLG+ESSCDETGLALYDT+RGLLAHAL+SQ+ MH++YGGVVPELASRDHIRRAIPLL+
Sbjct: 1   MLVLGIESSCDETGLALYDTQRGLLAHALYSQVKMHEEYGGVVPELASRDHIRRAIPLLE 60

Query: 61  QTLSDARVAAQEIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL 120
           Q  S++ VA   IDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL
Sbjct: 61  QVFSESGVAHGAIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL 120

Query: 121 LASKPPRFPFIALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLLGLGYPGG 180
           LAS+PP FPFIALLVSGGHTQLMRVDG+G+Y +LGETLDDAAGEAFDKSAKLLGLGYPGG
Sbjct: 121 LASEPPEFPFIALLVSGGHTQLMRVDGIGQYTMLGETLDDAAGEAFDKSAKLLGLGYPGG 180

Query: 181 PAISRLAEFGDPNAYQLPRPMLHSKNLDFSFSGLKTAVLTVVKQHGSNGSNICEQDKANI 240
           PAISR+AEFGDP AY+LPRPMLHSKNLDFSFSGLKTAVLTVVK   +  +NICEQDKANI
Sbjct: 181 PAISRMAEFGDPTAYKLPRPMLHSKNLDFSFSGLKTAVLTVVK---NQTTNICEQDKANI 237

Query: 241 ARGFVDAIVEVLVAKCMTALKQTNLKRLVIAGGVGANAQLRAALNAAAAKRRYEVFYPEL 300
           AR FVDAIVEVL AKC+TALK T LKRLVIAGGVGAN QLR +LNAAAAK+ ++VFYPEL
Sbjct: 238 ARAFVDAIVEVLTAKCVTALKHTGLKRLVIAGGVGANQQLRESLNAAAAKKHFKVFYPEL 297

Query: 301 QFCTDNGAMIAFAGAMRLREEPSVARKEYGFGVRPRWPLDELR 343
           +FCTDNGAMIAFAGAMRL+  P  A+K+Y F V+PRWPLD +R
Sbjct: 298 EFCTDNGAMIAFAGAMRLQINPDAAKKDYAFNVKPRWPLDSIR 340


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 651,651
Number of extensions: 25521
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 277
Effective length of database: 726,862
Effective search space: 201340774
Effective search space used: 201340774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)