BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0711.p
         (307 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombin...   480   e-137
gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herm...   134   5e-33

>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase
           [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  480 bits (1236), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 256/294 (87%)

Query: 14  SREAIDEFCDSLWLEDGLSSNTLEAYRRDMTLYAHWLHQERAKPLYETQAEDLYAYFAAR 73
           S+  IDEFCD+LWLEDGL+ N+LEAYRRD+ L+A WL  ER K L    A+D+ AYF AR
Sbjct: 16  SQAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFAR 75

Query: 74  HDETKPSSSNRRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLA 133
           H+ TK +SSNRRLAVL+RF+QLALRQNR++ DPCLKMR+A+QP R+PKTLSE QVEALLA
Sbjct: 76  HEVTKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135

Query: 134 APDVSTPLGLRDRAMIELMYASGLRVSELVLLKTIEVGMNEGVLRVTGKGSKTRLVPFGE 193
           APDV+TPLGLRDR M+ELMYASGLRV+ELVLLK+IEVGMNEGVLR+TGKG KTRLVPFGE
Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195

Query: 194 EAGSWIARYLAEARGQILQGQIDDALFVTARGAAMTRQMFWTLIKKYALQAGITVRLSPH 253
           EA  WI RYL EAR  IL GQIDDALFVTARGAAMTRQMFWTLIKK+A  A I   LSPH
Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPH 255

Query: 254 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307
           TLRHAFATHLLNHGADLRVVQ+LLGH+DISTTQIYTHVARERLK LH  HHPRG
Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC
           [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  134 bits (337), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 23/242 (9%)

Query: 84  RRLAVLRRFFQLALRQNRVAADPCLKMRTARQPQRLPKTLSEGQVEALLAA----PDVST 139
           R+L+  R FF     QN VA++P   ++  ++ + LPK L+      L+++     +   
Sbjct: 56  RKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADA 115

Query: 140 PLGLRDRAMIELMYASGLRVSELVLLKT-------------IEVGMNEGVLRVTGKGSKT 186
            + L +RAM EL+Y+SGLR SELV L               I+   +E +  VTGKGSK 
Sbjct: 116 TMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAM--VTGKGSKM 173

Query: 187 RLVPFGEEAGSWIARYLAEARGQILQGQIDD-ALFVTARGAAMTRQMFWTLIKKYALQAG 245
           R  P G+ A   +  +LA  R  +L+  +D   LF++ RG  ++ ++    +K +A   G
Sbjct: 174 RSAPIGQPAIDALKAWLA-VRDTLLK--LDPHPLFLSERGTRISARVLQLRLKAHAQAVG 230

Query: 246 ITVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHP 305
           + + + PH LRH+FA+H+L    DLR VQ +LGHA IS TQIYT +  +RL Q++ A HP
Sbjct: 231 LPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHP 290

Query: 306 RG 307
           R 
Sbjct: 291 RA 292


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 577,216
Number of extensions: 22516
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 226
Effective length of database: 733,452
Effective search space: 165760152
Effective search space used: 165760152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)