BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0710.p
         (167 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093691|ref|YP_001098766.1| putative methylated-DNA-[protei...   219   5e-59
gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cystein...    67   4e-13

>gi|134093691|ref|YP_001098766.1| putative
           methylated-DNA-[protein]-cysteine S-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 184

 Score =  219 bits (558), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 127/167 (76%), Gaps = 2/167 (1%)

Query: 1   MTQADSPLTALFSAVVHTPFGGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIG 60
           M Q  S  ++LFSA+V   FG +GIR++   + E+VYLP  +  K+A D VA +A  Q+ 
Sbjct: 20  MKQTSS--SSLFSAIVEASFGAIGIRTEDRVVRELVYLPASFHGKDAIDPVAQKAAVQVE 77

Query: 61  RYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQSAPRAVGQACGA 120
           RYL+DP F F LPL P+G+ FQQ+VW AI  IP G+V TYG +A+R+QSAPRAVGQACGA
Sbjct: 78  RYLSDPDFHFDLPLAPIGTPFQQKVWAAIGEIPRGKVLTYGDIARRVQSAPRAVGQACGA 137

Query: 121 NWYPLVVPCHRVTAAGGLGGFSHHDDEDGFHLEVKRWLLRHEGVNGY 167
           NW+PLV+PCHRVTAA GLGGFSHHDDE GFH+ VKRWLL HE V GY
Sbjct: 138 NWFPLVIPCHRVTAATGLGGFSHHDDETGFHVGVKRWLLAHEKVAGY 184


>gi|134093401|ref|YP_001098476.1| methylated-DNA--protein-cysteine
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 163

 Score = 67.4 bits (163), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 10/114 (8%)

Query: 54  QAVQQIGRYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQS--AP 111
            A  Q+  Y A    RF + L   G+ FQ+ VW A+ AIP GQ  +Y Q A+ + +  A 
Sbjct: 54  NAAMQLDEYFAAKRTRFDVALDLSGTAFQREVWSALNAIPFGQSVSYAQHAQGLGNPKAL 113

Query: 112 RAVGQACGANWYPLVVPCHRVT-AAGGLGGFSHHDDEDGFHLEVKRWLLRHEGV 164
           RAVG A G N   ++VPCHRV  +AG + G++         +E KR+LL  E V
Sbjct: 114 RAVGSAIGKNPVSIIVPCHRVIGSAGAVTGYAG-------GVERKRFLLALESV 160


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 335,311
Number of extensions: 12469
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 92
Effective length of database: 753,222
Effective search space: 69296424
Effective search space used: 69296424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)