BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0706.p
         (338 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-bindi...   402   e-114
gi|134094689|ref|YP_001099764.1| putative signal peptide [Hermin...   100   2e-22

>gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-binding
           periplasmic protein precursor [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score =  402 bits (1034), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 243/307 (79%)

Query: 26  AQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEALQL 85
           AQ   +IKFSHV  +DTPKG+AA  FKEL E++++GR++V+VYPN+ LYK+ +ELEALQL
Sbjct: 25  AQATTVIKFSHVAGSDTPKGRAALHFKELLEESSRGRIRVDVYPNNQLYKESDELEALQL 84

Query: 86  GAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGRELFKKLEPKGITGL 145
           GAVQM+APSLAK    G ++FEVFDLPY+F +K+ + RVTEG +G+ L K+L+ KG+ GL
Sbjct: 85  GAVQMVAPSLAKLAQFGAQDFEVFDLPYLFANKDAVARVTEGILGKALLKRLDSKGMVGL 144

Query: 146 AYWDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQT 205
           AYWDNGFK+MSANKPL+ P DF G+KMR+ SS VL++QMRALGA PQ++  +EVY AL++
Sbjct: 145 AYWDNGFKIMSANKPLKMPADFVGMKMRVHSSPVLESQMRALGAIPQIMDANEVYFALRS 204

Query: 206 GVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYAVIVNKKFWDGLPSDIRTELEGAMK 265
           GV+DG E+ P N Y +K+++VQ ++TVSNHGYLG AVIVNKKFWDGLP D+R  ++ AM+
Sbjct: 205 GVIDGLESAPLNFYARKLYDVQSHITVSNHGYLGSAVIVNKKFWDGLPFDLRKMIDDAMQ 264

Query: 266 DATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLI 325
            AT Y N +A +EN+AAL  + KT KTT+Y LTD E A W +ALLPV++ +  RIGK ++
Sbjct: 265 AATTYGNTLAAKENEAALELIRKTRKTTIYVLTDKESAAWHQALLPVRKDLEERIGKAVV 324

Query: 326 DAVNKEA 332
             V KEA
Sbjct: 325 MTVAKEA 331


>gi|134094689|ref|YP_001099764.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 24/304 (7%)

Query: 18  VGLAASALAQQPIIIKFSHVVANDTPKGKAAE---------RFKELAEKATKGRVKVEVY 68
           +G +AS++A   II K SH      P G  A+         +F +  EK T G +K E+Y
Sbjct: 21  MGFSASSMAATKII-KISH----QFPGGDGADVDFRHRLAVKFAQDVEKRTNGELKFEIY 75

Query: 69  PNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGP 128
           P+++L K   +  A+Q GA+ M    LA  G   + E  +  +P +  S E   R    P
Sbjct: 76  PSASLVKPNSQFSAMQTGALDMTVLPLAYEGG-KIPETNLGLMPALVTSYEQGLRWKTAP 134

Query: 129 IGRELFKKLEPKGITGLAY-WDNGFKVMSANKPLRHPNDFRGLKMRIQSSKVLDAQMRAL 187
           IG+ L   +E KG+  + + W  G  V S  K +  P+D + +K+R   SK +D  ++  
Sbjct: 135 IGKALNDVVEGKGVKIITWVWQAG-GVASKTKSIVQPSDAKDVKIR-GGSKEMDMMLKGA 192

Query: 188 GANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKYVTVSNHGYLGYA---VIV 244
           G +   +  SE+Y A+QTGV+D      ++L + +++EV K VT +      +    +++
Sbjct: 193 GGSITNVPSSEIYNAMQTGVLDAAVTSSTSLLSFRLYEVAKQVTTARKNTFWFMFEPLLM 252

Query: 245 NKKFWDGL-PSDIRTELEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKA 303
            K  +D L P+  +  +E  +    K+A     +++D  L  V      T   + DA  A
Sbjct: 253 AKSTYDSLTPAQQKIVMEVGV-SLEKFAME-ESKKDDVRLGEVYAKNGATASDMDDAAFA 310

Query: 304 EWRK 307
           +WR+
Sbjct: 311 KWRE 314


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 591,223
Number of extensions: 23117
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 256
Effective length of database: 730,157
Effective search space: 186920192
Effective search space used: 186920192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)