BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0704.p (196 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate trans... 291 2e-80 gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg... 66 1e-12 gi|134093419|ref|YP_001098494.1| putative two-component response... 62 2e-11 gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon... 60 6e-11 gi|134095013|ref|YP_001100088.1| putative transcriptional regula... 54 7e-09 >gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Herminiimonas arsenicoxydans] Length = 196 Score = 291 bits (744), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/196 (72%), Positives = 160/196 (81%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPG 60 MLHI+DDEE+IRDSL WLA+SR I A YDSG A ++ L + S +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPAVAYDSGKAFLATLDSISRTTPQGQCVLLDVRMPD 60 Query: 61 NSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQ 120 SG+ALF+ L +R + PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDRV + Sbjct: 61 VSGIALFDLLSSRSMTQLFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRVQE 120 Query: 121 ALESSRAGSAEDAVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 AL +S SA A+ RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHIF Sbjct: 121 ALSASEQASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIF 180 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELARLLK Sbjct: 181 DKMNVKTAVELARLLK 196 >gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 215 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 28/205 (13%) Query: 4 IVDDEEIIRDSLTW-LARSRNIAATGY-DSGMALMSALSAASGIDAEGEC--LLLDVRMP 59 I DD I+R+ L LA +R+I G+ ++G S A + EG C LLLD+ MP Sbjct: 11 IADDHAIVREGLKQILADTRDIVVAGHAENG-------SEAIRLSREGLCNVLLLDISMP 63 Query: 60 GNSGVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVL 119 SG+ + +++ + ++ L+ H + A+ LK GA + K +L+ + Sbjct: 64 DRSGIEVLKQVRKES--PKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIR 121 Query: 120 QALESSRAGSAEDAVQGRLA-------------ALSAREREVLDLILAGKMNKVIADELG 166 Q + SAE A + LA LS RE + L +I +GK IA EL Sbjct: 122 QVAAGRKYISAELAQE--LANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELV 179 Query: 167 ISMRTVEVHRAHIFDKMNVKTAVEL 191 +S++T+ ++R+ + KM ++ EL Sbjct: 180 LSVKTISMYRSRLLQKMKLRHNAEL 204 >gi|134093419|ref|YP_001098494.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] Length = 236 Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 12/131 (9%) Query: 4 IVDDEEIIRDSLT-WLARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPGNS 62 +VDDE IR+ L+ L ++ AT ++ A L AA A+ + +LLD+ MP Sbjct: 6 VVDDEMGIRELLSEILGDEGHVVATAENAQQA--RELRAA----AKPDLVLLDIWMPDTD 59 Query: 63 GVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQAL 122 GV L E + GLL PVI ++GH + AV+ + GA +F EKP + +L+ V Q + Sbjct: 60 GVTLLKEWQRDGLL-TMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGI 118 Query: 123 ----ESSRAGS 129 E SR S Sbjct: 119 SRGQEVSRVAS 129 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] Length = 210 Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 18/195 (9%) Query: 4 IVDDEEIIRDSLTW-LARSRNIAATGYDSGMALMSALSAASGIDAEGECLLLDVRMPGNS 62 +VDD ++R + + +A+ ++ G + L A D +LLD+ MP S Sbjct: 6 VVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWD----IVLLDINMPDKS 61 Query: 63 GVALFNELKNRGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLQAL 122 GV + ++K PV+ L+ H + AV +L++GA + +K +L+ + L Sbjct: 62 GVEVLKQIKREK--PELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTIL 119 Query: 123 ESSRAGS--------AE---DAVQGRLAALSAREREVLDLILAGKMNKVIADELGISMRT 171 + S AE +A + LS RE E+ + G IADEL +S++T Sbjct: 120 RGHKYISHTVAELLTAEVDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKT 179 Query: 172 VEVHRAHIFDKMNVK 186 V +RA + KMN++ Sbjct: 180 VSTYRARVLQKMNME 194 >gi|134095013|ref|YP_001100088.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 185 Score = 53.5 bits (127), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 37/53 (69%) Query: 139 AALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVKTAVEL 191 AAL+ RERE+ +++ GK +K+IA ++G+S RTVE+HRA + K T EL Sbjct: 124 AALTPREREIAAMLVDGKTSKLIARQIGLSPRTVEMHRAKLMRKFTASTTSEL 176 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 332,307 Number of extensions: 11747 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 6 Length of query: 196 Length of database: 1,000,347 Length adjustment: 77 Effective length of query: 119 Effective length of database: 746,632 Effective search space: 88849208 Effective search space used: 88849208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)