BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0703.p
         (296 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093684|ref|YP_001098759.1| hypothetical protein HEAR0410 [...   342   2e-95

>gi|134093684|ref|YP_001098759.1| hypothetical protein HEAR0410
           [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  342 bits (876), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 227/296 (76%)

Query: 1   MEVLNLLLPDFSLIALGVLIYRISNWGDDFWAGMEKLVYFLLFPALLFYSTARLKVDLSV 60
           M ++N+LLPDF LI  G +++R + WG +FWAGMEKL+Y++LFPALLFYSTAR  ++ + 
Sbjct: 1   MHIVNILLPDFLLILFGAILFRATEWGKEFWAGMEKLIYYVLFPALLFYSTARSPINFAA 60

Query: 61  TGGMVQTGVGALIVGIALTWLGKPLLRATPMTYASGMQCAYRFNSYIALALATRMAGEEG 120
           TG  +Q  + A + GIAL WL KPL RA PM + SG+Q A+RFNSYIALA+A R+ G++G
Sbjct: 61  TGQFLQIAIAACLTGIALGWLAKPLFRAGPMIFESGVQTAFRFNSYIALAIAGRLGGDQG 120

Query: 121 AGLMAILLGFGVPLCNIAAVHALAPKNGNLLRELAKNPLLVATAGGLTFSALGLHLPEVA 180
             LM +++GF VP+CN+AAVHAL    G LL EL KNPLL+AT GG+ F+ LG  LP++A
Sbjct: 121 TSLMGLVIGFAVPICNMAAVHALVKNKGRLLLELLKNPLLMATMGGVVFNLLGFQLPDLA 180

Query: 181 SVVLSRLGAASIALGLLMVGAGLRLSGLKESKLVVGWFILIKLVAVPLVAYAIGNWLHLP 240
           S  LSRLG ASIALGL+MVGAGLRL+GL  +K +  +F+ +KL+AVP + YA+G W+ L 
Sbjct: 181 SAFLSRLGNASIALGLIMVGAGLRLTGLHAAKGIAAYFLTVKLLAVPAITYALGKWVGLS 240

Query: 241 PLQLRIVVLFCSLPTASSAYILAARMGGNGPFTAFLISFGTLLSALTIPVWLTLVH 296
           PL L+IVV+F +LPTASS Y+LA RMGGNGP  AFLIS GTL+S  T+P+WL L+ 
Sbjct: 241 PLHLQIVVMFAALPTASSCYVLAVRMGGNGPLVAFLISAGTLISMATLPLWLALLQ 296


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 601,472
Number of extensions: 26498
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 215
Effective length of database: 733,452
Effective search space: 157692180
Effective search space used: 157692180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)