BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0699.p
         (228 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimo...   288   2e-79
gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448 [...    57   8e-10
gi|134094328|ref|YP_001099403.1| putative alkaline phosphatase p...    55   4e-09

>gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimonas
           arsenicoxydans]
          Length = 213

 Score =  288 bits (737), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 176/212 (83%)

Query: 9   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 68
           MD++Q  D+++HVDKYLG  I QYGALIY VLF I+FCETGLVV PFLPGD+LLFIAG F
Sbjct: 1   MDFMQFFDMILHVDKYLGTFIAQYGALIYLVLFTIIFCETGLVVFPFLPGDTLLFIAGAF 60

Query: 69  CAMGAMDIWLLMSLLVAAAVAGNTLNYWIGGWVGHRVYTHNYRWLNPEAIRKTHAFYEKH 128
           CA G M++WLL+SLL+ AA+ GNT+NYWIG  +G +V+TH+YRWL+  A++KTH+FYE H
Sbjct: 61  CASGGMNLWLLLSLLIVAAILGNTVNYWIGQRIGEKVFTHDYRWLDRAALQKTHSFYENH 120

Query: 129 GGKTIVIARFTPIVRTFAPFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 188
           GGKT+++ARF PIVRTFAPF+AGVS M+F RFQ FNV GA LWV  LVV GYLFGNIP++
Sbjct: 121 GGKTLILARFLPIVRTFAPFVAGVSKMTFVRFQFFNVTGAVLWVALLVVGGYLFGNIPII 180

Query: 189 QQNLNTLVLVGLIGAVIPIVLGVLWQLWRKLR 220
           + +LNT+VLVG+  A IP+ LG LW+L ++ +
Sbjct: 181 RDHLNTIVLVGVGAAAIPVALGALWKLAQRFK 212


>gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 57.0 bits (136), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 10/180 (5%)

Query: 28  LIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAMGAMDIWLLMSLLVAAA 87
           LIEQYG L    +F  V  E     +P  P    L I G     G     +L+ + V AA
Sbjct: 7   LIEQYGLLF---VFANVLLEQLGAPIPAYP---TLVITGALLGRGEYSAPMLLFVAVLAA 60

Query: 88  VAGNTLNYWIGGWVGHRVYTHNYR-WLNPEA-IRKTHAFYEKHGGKTIVIARFTPIVRTF 145
           +  +   Y  G   G RV     R  L+P++ +R+T + Y + G  ++++A+F P   + 
Sbjct: 61  LIADFAWYLAGRRYGARVMARLCRISLSPDSCVRQTESIYLRFGPASLLVAKFIPGFASV 120

Query: 146 APFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQNLNTLVLVGLIGAVI 205
           A  +AG       +F  F+ LGA LW    + LG LF +   V   L+ L  +G  G V+
Sbjct: 121 ASALAGAIGTRSVKFIFFDALGAALWSGSAIFLGSLFSS--AVSDLLDILASLGKWGLVL 178


>gi|134094328|ref|YP_001099403.1| putative alkaline phosphatase
           protein [Herminiimonas arsenicoxydans]
          Length = 200

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 12/160 (7%)

Query: 28  LIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAMGAMDIWLLMSLLVAAA 87
           ++ Q G   Y  +FL++  E    V P +P + ++ +AG   A G ++I L++    A +
Sbjct: 8   IVSQSG---YLGIFLLMLAEN---VFPPIPSELIMPLAGFVSARGELNIVLVILAGTAGS 61

Query: 88  VAGNTLNYWIGGWVGH----RVYTHNYRW--LNPEAIRKTHAFYEKHGGKTIVIARFTPI 141
           V G    Y+ G   G     R+   + RW  L+   I     ++ ++G   +   R  P 
Sbjct: 62  VVGALPWYYAGAIFGQHRLKRIANKHGRWMTLSSRDIDVASMWFARYGAAAVFFGRLIPA 121

Query: 142 VRTFAPFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYL 181
           +RT     AG+  M    F  ++ +G+ +W   L V GYL
Sbjct: 122 IRTLISVPAGIVHMPMLPFLAYSTIGSLIWTALLAVTGYL 161


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.147    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 388,110
Number of extensions: 13313
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 149
Effective length of database: 740,042
Effective search space: 110266258
Effective search space used: 110266258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)