BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0697.p (633 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 428 e-121 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 350 2e-97 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 346 2e-96 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 342 4e-95 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 341 6e-95 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 428 bits (1100), Expect = e-121, Method: Compositional matrix adjust. Identities = 246/444 (55%), Positives = 313/444 (70%), Gaps = 7/444 (1%) Query: 193 ISADVKALKDQIKSLKIGATGNFFALNGREGKDQGVMIAGAAREGKEEGGNLLEAKDASG 252 +S+D +K + SLK+G TG ++ L+ G D G +I A REG+ N+L K G Sbjct: 62 MSSDAALIKSTLLSLKVGKTGGYYVLDAAAGPDYGKLIIAAKREGQ----NVLADKTTDG 117 Query: 253 DTYIKTLVQQKQGELRYTA---ADGRKKIAVFTHYAPWNWVIVGEAAVDEITSEVNDMRN 309 +IK ++ +K+G + Y + A +++A F + NWVIVG+ VDE T E +RN Sbjct: 118 REFIKEILSKKEGAIHYRSPADAGSPERLAAFIYQQDKNWVIVGDTYVDEFTHEATVLRN 177 Query: 310 LYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRLM 369 G + L +L L I + VT PL Q A ++A GDLT+RL +DEIG L+ Sbjct: 178 FLAGAACIALLLLTACLYAGIRKTVTGPLAQATQLARQLATGDLTSRLETKRTDEIGLLL 237 Query: 370 GAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEELT 429 A N I GL+ VV ++R GTE + T EIAAGNL+LS+RTEQQA +LEETASAMEE+T Sbjct: 238 RAVNSIGQGLANVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAMEEMT 297 Query: 430 STVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAF 489 STVK+NAANA QA+ LA +A+EVA GG VV +VV TMD+IN SS++I DIISVIDGIAF Sbjct: 298 STVKENAANAEQANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVIDGIAF 357 Query: 490 QTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQ 549 QTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+AAA+EIK LI+ SV V G + Sbjct: 358 QTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQSGSK 417 Query: 550 LVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQ 609 LV AG TM++VVSS+QRV ++ EI++ASREQS GI+Q+N+AIAQMD+ TQQNAALVEQ Sbjct: 418 LVAHAGATMDEVVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQ 477 Query: 610 AAAAAQSLQQQAERLAAAVSTFRV 633 AAA+A+SLQ Q L VS F + Sbjct: 478 AAASAESLQNQTTELNNVVSVFTI 501 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 350 bits (897), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 256/326 (78%), Gaps = 1/326 (0%) Query: 308 RNLYVGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGR 367 R L + LGL+ L L ++L M+ R +T+PLD A +A GDLT R+ V S DE G+ Sbjct: 187 RMLLIVLGLVAL-TLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQ 245 Query: 368 LMGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEE 427 L+ A ++ L+ ++ VR+G + I TA+++IA+GNL+LS+RTE+QA +LEETAS+MEE Sbjct: 246 LLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEE 305 Query: 428 LTSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGI 487 LTSTVKQNA NA QA++LA +AS VA GG VV +VV TMD IN+S+++IVDII VIDGI Sbjct: 306 LTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGI 365 Query: 488 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGG 547 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LID SV V G Sbjct: 366 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTG 425 Query: 548 GQLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALV 607 +LV +AG TM +VV SV+RV+ +++EI AS+EQS GI+Q+N+AI QMD+ TQQNAALV Sbjct: 426 SKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALV 485 Query: 608 EQAAAAAQSLQQQAERLAAAVSTFRV 633 E+AAAAA+SL +QA LA AVS F++ Sbjct: 486 EEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 346 bits (887), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 200/303 (66%), Positives = 246/303 (81%) Query: 331 NRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRAGT 390 +R +TRPL+ + A +AGGDL R+ V+SSDE G+L+ A ++ GL + VS VR G Sbjct: 213 SRSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGI 272 Query: 391 EEINTAASEIAAGNLNLSARTEQQAGALEETASAMEELTSTVKQNAANAIQADELAGSAS 450 E I TA+++IAAGNL+LS+RTE+QA +LEETAS+MEELTSTVKQNA NA QA++LA SAS Sbjct: 273 ETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSAS 332 Query: 451 EVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 510 VA GG VV QVV TM+ INSS+++IVDII VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 333 GVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 392 Query: 511 GFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVST 570 GFAVVA+EVR LAQRSAAAAKEIK LI SV V G +LV +AG TM +VV+SV+RV+ Sbjct: 393 GFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTD 452 Query: 571 VISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVST 630 ++SEI AS+EQS GI+Q+N+AI QMD+ TQQNAALVE+AAAAA+SL +QA +LA AVS Sbjct: 453 IMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSV 512 Query: 631 FRV 633 F++ Sbjct: 513 FKL 515 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 342 bits (876), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 203/322 (63%), Positives = 245/322 (76%), Gaps = 4/322 (1%) Query: 312 VGLGLLFLAVLAVILTVMINRMVTRPLDAVCQAADRIAGGDLTTRLHVHSSDEIGRLMGA 371 V LGL+ +A+ A L R +T PL + D IA GDLT+ + V S +E+G LM Sbjct: 197 VLLGLIGVAIYAFFLI----RAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLG 252 Query: 372 FNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEELTST 431 + L++ V+ VR G+ I+TA +EIAAGNL+LS+RTEQQA +LEETAS+MEELTST Sbjct: 253 LQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTST 312 Query: 432 VKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQT 491 VKQN NA QA++LA SAS VA GG VV VV TMDAIN+S+++IVDII VIDGIAFQT Sbjct: 313 VKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQT 372 Query: 492 NILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLV 551 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LID SV V G +LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLV 432 Query: 552 TQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAA 611 +AG TM +VV SV+RV+ ++SEI AS+EQS GI+Q+N AI QMDE TQQNAALVEQAA Sbjct: 433 AEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAA 492 Query: 612 AAAQSLQQQAERLAAAVSTFRV 633 AAA SL+ QA L+ VS F++ Sbjct: 493 AAASSLRDQATNLSTVVSVFKL 514 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 341 bits (874), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 201/325 (61%), Positives = 255/325 (78%), Gaps = 5/325 (1%) Query: 314 LGLLFLAVLAVIL-TVMINRM---VTRPLDAVCQAADRIAGGDLTTRLHV-HSSDEIGRL 368 + L+ AV+A++L T++ R+ +TRPL + A+ +A GDLT R + + DE G L Sbjct: 190 MALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLL 249 Query: 369 MGAFNGISMGLSEVVSSVRAGTEEINTAASEIAAGNLNLSARTEQQAGALEETASAMEEL 428 + A + L V+ +R GT+ I TA+SEIA+GNL+LS+RTEQQA +LEETAS+MEEL Sbjct: 250 LSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEEL 309 Query: 429 TSTVKQNAANAIQADELAGSASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIA 488 TSTVKQNA N+ QA++LA +AS VA GG VV QVV TM AIN+S+++IVDII VIDGIA Sbjct: 310 TSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIA 369 Query: 489 FQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGG 548 FQTNILALNAAVEAARAGEQGRGFAVVATEVR LAQRSAAAAKEIK LI SV+ V G Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGS 429 Query: 549 QLVTQAGNTMNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVE 608 +LV +AG TM+++V V+RV+ +++EIT AS+EQS+GI+Q+N+A++QMD+ TQQNAALVE Sbjct: 430 KLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVE 489 Query: 609 QAAAAAQSLQQQAERLAAAVSTFRV 633 +AAAAA+SLQ QA LA AVS FRV Sbjct: 490 EAAAAAESLQDQARNLAEAVSVFRV 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 912,347 Number of extensions: 33147 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 15 Length of query: 633 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 546 Effective length of database: 713,682 Effective search space: 389670372 Effective search space used: 389670372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)