BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0696.p
         (645 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093680|ref|YP_001098755.1| DNA mismatch repair protein [He...   964   0.0  

>gi|134093680|ref|YP_001098755.1| DNA mismatch repair protein
           [Herminiimonas arsenicoxydans]
          Length = 612

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/638 (75%), Positives = 537/638 (84%), Gaps = 33/638 (5%)

Query: 12  SSPSYRPIQALPDQLISQIAAGEVIERPSAVVKELLENAIDAGSTQITVRLEQGGVKRIA 71
           SSPS RPIQAL DQLISQIAAGEV+ERPSAVVKELLENA+DAG+T I+VRLEQGGVKRIA
Sbjct: 4   SSPSVRPIQALSDQLISQIAAGEVVERPSAVVKELLENALDAGATHISVRLEQGGVKRIA 63

Query: 72  ITDNGRGIPPDQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTA 131
           ITDNGRGI P+QLPLALARHATSKI SLT+LENV+TLGFRGEALASIASV+QLT+TSRTA
Sbjct: 64  ITDNGRGIAPEQLPLALARHATSKINSLTELENVATLGFRGEALASIASVSQLTLTSRTA 123

Query: 132 DAPHAWEITG----SQFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEV 187
           DA HAWEI+G     Q  TVAP+SG  GTT+DV DLYFNTPARRKFLK+EQTE+GHCAEV
Sbjct: 124 DAAHAWEISGVQSIDQKSTVAPSSGTAGTTVDVLDLYFNTPARRKFLKTEQTEFGHCAEV 183

Query: 188 VRRIALARPDVSFSLSHNGKTVDHWNVGEFAKRSAHILGDEFANARLPLDESAGPLRLHG 247
           VRRIAL+RPDV+FSL+HNGKT+DHW V + A+RSAHILG+EF+ ARLPL E+AGPLRLHG
Sbjct: 184 VRRIALSRPDVAFSLTHNGKTIDHWAVNDIARRSAHILGNEFSAARLPLKETAGPLRLHG 243

Query: 248 FVGLPTASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPSYALSLTLDPALV 307
           F+GLPTASKAR D QYFYVNGRFVRDKLL HAVR+AYQDVLHGDRYPSY +SL LDPALV
Sbjct: 244 FIGLPTASKARGDAQYFYVNGRFVRDKLLMHAVRSAYQDVLHGDRYPSYVISLELDPALV 303

Query: 308 DVNVHPSKIEVRFRDSRAVHQFVFHAVSRTLAQTSAVSFGNLPQQPGEASEELAVQPAAT 367
           DVNVHPSKIEVRFRDSRAVHQFVFHAV+R LAQTSA +FG  P             PA  
Sbjct: 304 DVNVHPSKIEVRFRDSRAVHQFVFHAVTRALAQTSATAFGAAPSP----------TPA-- 351

Query: 368 GPNAPLPWTREQKQQSFSAQFAEQPRPFSFGGNSGFGIRQDRAAYGNMFRNEPTSDADGG 427
            P++ LPW REQ+Q +F+ QF           NS +G+ Q  A YG +F N P S+    
Sbjct: 352 -PSSALPWLREQQQSTFAPQF-----------NSPYGVAQSAANYGALFANGPASNDSNS 399

Query: 428 AATRGTADQFSSAPAPVAAPLPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERI 487
           AA         +A +  A  LP+ +FPLGFALAQLHGI++LAQN  GLV+VDMHAAHERI
Sbjct: 400 AAP-----SLHTAGSHGATTLPDDEFPLGFALAQLHGIFILAQNTKGLVLVDMHAAHERI 454

Query: 488 LYEQLKTALDGNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVR 547
           LYEQLK ALD NE+ VQPLLIP+TFYAD +EVGT E++Q+ L ALGFDIA +SPTTLAVR
Sbjct: 455 LYEQLKHALDDNELQVQPLLIPITFYADGMEVGTTEDNQDILHALGFDIAALSPTTLAVR 514

Query: 548 AVPALLKNADAQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMN 607
           AVPALLKNADAQTLARDVLRDVRE+GGSRVLLERRNELLGTLACHTAVRANR+LT+PEMN
Sbjct: 515 AVPALLKNADAQTLARDVLRDVREFGGSRVLLERRNELLGTLACHTAVRANRTLTVPEMN 574

Query: 608 ALLRQMEATERSDQCNHGRPTWTQMGLSDLDKLFLRGQ 645
           ALLRQMEATER+DQCNHGRPTW Q+GLSDLDKLF RG+
Sbjct: 575 ALLRQMEATERADQCNHGRPTWVQLGLSDLDKLFERGR 612


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,181,261
Number of extensions: 48392
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 557
Effective length of database: 710,387
Effective search space: 395685559
Effective search space used: 395685559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)