BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0695.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093679|ref|YP_001098754.1| tRNA delta(2)-isopentenylpyroph...   450   e-128

>gi|134093679|ref|YP_001098754.1| tRNA
           delta(2)-isopentenylpyrophosphate transferase
           [Herminiimonas arsenicoxydans]
          Length = 320

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/306 (73%), Positives = 249/306 (81%)

Query: 6   PLAIAIMGPTASGKTAAALEIARHLPCEIISVDSALVYRGMDIGTAKPSAEELAAVPHHL 65
           PL ++IMGPTASGKTA AL IA  +P EIISVDSALVYR M+IGTAKP+ EE A+VPHHL
Sbjct: 10  PLVVSIMGPTASGKTATALAIAEQIPSEIISVDSALVYREMNIGTAKPTDEERASVPHHL 69

Query: 66  IDIIDPTAAYSAMQFRQDALRLTREIAARGKLPLLVGGTMLYFKVLRDGLDELPQADPAL 125
           IDI+DP  AYS MQFRQDALRL  EI+ARGKL LLVGGTMLYFK L+DGLD LPQAD AL
Sbjct: 70  IDILDPLDAYSVMQFRQDALRLVAEISARGKLALLVGGTMLYFKGLKDGLDALPQADAAL 129

Query: 126 RAQLDQQAAEFGMPAMHARLAALDPVTAARLKPTDSQRIQRALEITLLTGQPMSSLLSQK 185
           RA+LD +AA  G PAMHA+LA LDP+TAARLKP D+QRIQRALEI  LTGQPMS+LL+Q 
Sbjct: 130 RAELDAEAALIGSPAMHAKLAKLDPITAARLKPNDTQRIQRALEIITLTGQPMSALLAQA 189

Query: 186 PAEPLPFELLPLALEPSERAVLHERIALRFDLMLRDGALQREVATLRERGDLHLGLPSMR 245
           P   LPF LLP+ALEPSER+VLH RIA RFD ML+DG L  EV  LR RGDLH GLPSMR
Sbjct: 190 PKSELPFTLLPIALEPSERSVLHARIATRFDAMLKDGGLLDEVRALRARGDLHPGLPSMR 249

Query: 246 CVGYRQMWEYLDGSIDAATLREKGIAATRQLAKRQLTWLRSMPERISIDCNRPDATAEVL 305
           CVGYRQ WEYLDG+   A LREKGIAATRQLAKRQLTWLR MPER +IDC  PD    +L
Sbjct: 250 CVGYRQSWEYLDGAYGLAELREKGIAATRQLAKRQLTWLRGMPERQTIDCLAPDVAGSIL 309

Query: 306 MQVRQA 311
            ++  A
Sbjct: 310 RKIVSA 315


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 553,469
Number of extensions: 21521
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)