BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0694.p (379 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 152 2e-38 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 145 2e-36 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 136 1e-33 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 124 8e-30 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 121 6e-29 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 1/190 (0%) Query: 181 LELRIAERTHDLAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFI 240 LE R+ + L + E L L + D LTGI +R+ F++ L W + + L + FI Sbjct: 125 LEQRLRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFI 184 Query: 241 DVDWFKPYNDHYGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGL 300 DVD+FK +ND YGH+AGD LR+VA L +++ R E VAR+GGEEF V+ ++ + + Sbjct: 185 DVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAI 244 Query: 301 QIVQRMCDAIYALDLPHAGSLLGRLTISCGVASCIPAHPEARLETLMQAADAALYQAKTA 360 + +C ++ LD+PHA S LTISCGV P+ A+ E L++ AD+ALYQAK Sbjct: 245 MHAENLCRSVRDLDIPHAASPHQFLTISCGVVRMKPS-SMAQPEVLLEQADSALYQAKAR 303 Query: 361 GRNRVLMAPP 370 GRN+V P Sbjct: 304 GRNQVASCEP 313 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 118/191 (61%), Gaps = 2/191 (1%) Query: 182 ELRIAERTHDLAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFID 241 ELR A DL ++N L +L+L D LTG+ANRR FD LD E+ R++R+ L + +D Sbjct: 328 ELRTAR--DDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLD 385 Query: 242 VDWFKPYNDHYGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQ 301 VD FK YND YGH GD L+++++ L+ R G+ VARYGGEEF +++ TD Sbjct: 386 VDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAA 445 Query: 302 IVQRMCDAIYALDLPHAGSLLGRLTISCGVASCIPAHPEARLETLMQAADAALYQAKTAG 361 + +R+ AI AL++ HA + G +T S G+A+ IP + + L+ AAD ALY+AK G Sbjct: 446 VAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDG 505 Query: 362 RNRVLMAPPVS 372 RN+ ++ S Sbjct: 506 RNQSCISTQAS 516 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 5/185 (2%) Query: 185 IAERTH---DLAQANERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFID 241 I+ER L + L +LS DGLTG+ANRR FD + EW + + +PL+V +D Sbjct: 93 ISERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLD 152 Query: 242 VDWFKPYNDHYGHVAGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQ 301 +D+FK YNDHYGH+ GD L++VA L R+ + AR+GGEEF +++ +TD + + Sbjct: 153 IDYFKQYNDHYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAIN 212 Query: 302 IVQRMCDAIYALDLPHAGS-LLGRLTISCGVASCIPAHPEARLETLMQAADAALYQAKTA 360 I +R I +PH S ++ +T+S GV + IP + + ++ D LYQAK Sbjct: 213 IAERCRTLICKEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIR-FIEEVDKRLYQAKQR 271 Query: 361 GRNRV 365 GRN + Sbjct: 272 GRNCI 276 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 124 bits (311), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%) Query: 161 RALYAQLEQEKESLRLLNKSLELRIAERTHDLAQANERLRSLSLTDGLTGIANRRSFDET 220 R + L Q++E+L N+ LE +++ RT +L + N L L+ TD LTG+ANR +E Sbjct: 360 RGMSNTLIQQREALAQSNQELEAKVSARTAELQELNITLEQLARTDALTGLANRMHTNER 419 Query: 221 LDQEWRRSVRHARPLTVAFIDVDWFKPYNDHYGHVAGDAVLRQVAQTLQETIGRAGETVA 280 L +E+ R R P + +DVD+FK ND YGH GD VL+ VA L T+ R + V Sbjct: 420 LAEEFARFKRSKIPYCILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSATV-RKTDFVG 478 Query: 281 RYGGEEFAVIVSDTDGQHGLQIVQRMCDAIYALDLPHAGSLLGRLTISCGVASCIPAHPE 340 R+GGEEF I+ TD + + +++ + I + + +G LT+S GV + Sbjct: 479 RHGGEEFLSILPMTDSSAAMVVAEKIRNTIESTPI----GPVGNLTVSIGVQEVTVN--D 532 Query: 341 ARLETLMQAADAALYQAKTAGRNRVL 366 + + AD +YQAK +GRN+V+ Sbjct: 533 INEDVAVTRADECMYQAKKSGRNKVI 558 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 121 bits (303), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 5/175 (2%) Query: 196 NERLRSLSLTDGLTGIANRRSFDETLDQEWRRSVRHARPLTVAFIDVDWFKPYNDHYGHV 255 NERL+ + LTD LTG+ NRR + L +E R+ RH L+ +ID+D+FK ND+YGH Sbjct: 138 NERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGHQ 197 Query: 256 AGDAVLRQVAQTLQETIGRAGETVARYGGEEFAVIVSDTDGQHGLQIVQRMCDAIYALDL 315 GD VLR+VA ++ + R + + R+GGEEF V++ D + L + +RM +I L Sbjct: 198 GGDEVLREVAARIKAEL-RLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRPL 256 Query: 316 PHAGSLLGRLTISCGVASCIPAHPEARLETLMQ----AADAALYQAKTAGRNRVL 366 + RL++S GV++ + + T+ Q AD ALY AK GRN+V+ Sbjct: 257 VLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVM 311 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 689,493 Number of extensions: 27419 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 31 Length of query: 379 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 296 Effective length of database: 726,862 Effective search space: 215151152 Effective search space used: 215151152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)