BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0691.p (529 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 122 4e-29 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 109 4e-25 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 108 5e-25 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 108 5e-25 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 107 1e-24 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 122 bits (306), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 6 ILQMTGISKSFGATRALSEMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDRGDILL 65 IL + +SK FG +AL+++++ I G+I+ L+G NGAGK+T V++G++ D G L Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 66 DGKPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLI---------- 115 GK + P AGI +Q + + ++ NV +G +RT GL Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAAR 129 Query: 116 -DHAAMRKRTDAVLSQLGAAFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAAL 174 + AA+R R +L +G A A A LS +Q+++EIARAL +++ +DEP A + Sbjct: 130 QEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 189 Query: 175 SERETEHLFGVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGE 224 + E L ++ +++ EG I+ I H + V L DR+TVL G + E Sbjct: 190 NATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAE 239 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 30/216 (13%) Query: 285 GEVLGFAGLVGAGRTELARLLFGADARSGGQILLGDQALQIDEPRAAMRAGIAYVPEDRK 344 G++ G G GAG+T ++ G G L +A P +AGIA ++ + Sbjct: 36 GQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELAGKAYSPSAPHLVAKAGIARTFQNIR 95 Query: 345 GQGLFLQMAVGTNATMNVAGRHARL--GL----------------VRSRALRGVAQASIR 386 LF +M N + GRH R GL +R+RA+ + I Sbjct: 96 ---LFGEMTALENV---MVGRHVRTHQGLFGAVFHHKAARQEEAAIRARAMELLDFVGIA 149 Query: 387 RLNVKVAHPDVAVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLIHK 446 + + A LS G+Q+++ +AR L P++L LDEP G++ K + +L+ K Sbjct: 150 QFAGRTAR------HLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVK 203 Query: 447 LAEQGVAVVVISSELPEIIGICDRVLVMREGSITGE 482 + +G +++I ++ ++G+CDR+ V+ G E Sbjct: 204 IKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAE 239 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 134/544 (24%), Positives = 238/544 (43%), Gaps = 56/544 (10%) Query: 5 PILQMTGISKSFGATRALSEMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDRG--D 62 P++++ I +G T AL+++ L I + L+G +G GKS+L+ + +G +G D Sbjct: 7 PVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSAD 66 Query: 63 IL-LDGKPVALRDPGASRAA------GINLIYQELAVAPNISVAANVFMGSELRTRWGLI 115 +L D + RD R A G NL Y L+V N+ A +F Sbjct: 67 VLGGDMRRKRHRDAVCPRIAYMPQGLGKNL-YPTLSVEENLQFFARLFGH---------- 115 Query: 116 DHAAMRKRTDAVLSQLGAAFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALS 175 D A R+R D++ G + G+LS +Q++ + AL+H ++I+DEPT + Sbjct: 116 DAAERRRRIDSLTRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD 175 Query: 176 ERETEHLFGVVRRLRDE--GLAIIYISHRMAEVYALADRVTVLRDGSFVGELTREQI--- 230 + ++ +R + +++I + M E D + + G + +++ Sbjct: 176 PLARAQFWSLIAGIRQQRPQISVIVATAYMDEAQGF-DWLVAMDGGRVLATGAPQELLAQ 234 Query: 231 ----DSERIVQMMVGRSLGEFYQHQRMAPEQAAALPTV-LQVQDLA-----GGRVKPASF 280 D E ++ +Q + P A V ++ +DL V +F Sbjct: 235 TGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFGDFTAVDHVNF 294 Query: 281 TVRAGEVLGFAGLVGAGRTELARLLFGADARSGGQILLGDQALQIDEPRAAMRAGIAYVP 340 +R GE+ GF G G G+T ++L G A S G+ L ++D A R + Y+ Sbjct: 295 RIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLFGH--EVDPHDIATRRRVGYMS 352 Query: 341 EDRKGQGLFLQMAVGTNATMNVAGRHARLGLVRSRALRGVAQASIRRLNVKVAHPDVAVG 400 + L+ +++V N + HARL V + AQ + R ++ D Sbjct: 353 QSFS---LYSELSVMQNLVL-----HARLFNVPEAEVAARAQQMLTRFGLE-EEIDALPN 403 Query: 401 KLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLIHKLAEQGVAVVVISSE 460 KL G +Q++ LA + P++LILDEPT GVD A+ ++L+ +L+ + + IS+ Sbjct: 404 KLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRDRVTIFISTH 463 Query: 461 LPEIIGICDRVLVMREGSITGELSGA---------AITQESIMHLATDTAGLSAAQNHGA 511 CDR+ +M G + + A + Q I +L T + AA++ Sbjct: 464 FMNEAERCDRISLMHAGKVLVSDTPAQLVAQRQVDTLEQAFIAYLEDATGVVPAAKDETD 523 Query: 512 MASQ 515 +A+Q Sbjct: 524 IAAQ 527 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 129/244 (52%), Gaps = 15/244 (6%) Query: 6 ILQMTGISKSFGATRALSEMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDRGDILL 65 +L++ +++ FG + + L+I GE L+G +G GK+TL+++++G PD G ILL Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 66 DGKPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRKRTD 125 DG + P R + ++Q A+ P+++VA N+ E+ + ++++ D Sbjct: 63 DGVDLT-GVPPEQRV--VRTVFQNYALFPHMTVAGNIAFPLEMAN----TPKSEIKQKVD 115 Query: 126 AVLSQLGAAFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEHL-FG 184 L + A+ LS ++Q+V IARALV R +++++DEP +AL + E + Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 185 VVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELTREQIDS-ERIVQMMVGRS 243 ++ ++ G+ +Y++H AE AL+ R+ V+ G+ EQ+D RI R Sbjct: 176 LINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNI------EQLDEPTRIYSYPRSRF 229 Query: 244 LGEF 247 + +F Sbjct: 230 VADF 233 Score = 68.6 bits (166), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 21/210 (10%) Query: 275 VKPASFTVRAGEVLGFAGLVGAGRTELARLLFGADARSGGQILLGDQALQIDEPRAAMRA 334 V S ++ AGE G G G+T L R++ G D G+ILL L Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDL----------T 68 Query: 335 GIAYVPEDRKGQGLFLQMAVGTNATM--NVAGRHARLGLVRSRALRGVAQA--SIRRLNV 390 G+ PE R + +F A+ + T+ N+A +S + V +A +R Sbjct: 69 GVP--PEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGF 126 Query: 391 KVAHPDVAVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEI-YQLIHKLAE 449 +P +LSGG +Q+V +AR L PK+L+LDEP +D + ++ +LI+ E Sbjct: 127 AARYPH----ELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKE 182 Query: 450 QGVAVVVISSELPEIIGICDRVLVMREGSI 479 G+ V ++ + E + + R+ VM +G+I Sbjct: 183 VGITFVYVTHDQAEALALSHRIAVMNKGNI 212 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 146/518 (28%), Positives = 246/518 (47%), Gaps = 69/518 (13%) Query: 6 ILQMTGISKSFGATRALSEMHLTIRPGEIHALMGENGAGKS-TLMKVLS-GVHAPDRGDI 63 +L++ + SF ++ ++++ +I GE AL+GE+G+GK+ T + +L A G I Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRI 62 Query: 64 LLDGKPVALRDPGASRAA---GINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAM 120 L +G+ + R A RA + +I+QE P ++ +G+++ GL+ H + Sbjct: 63 LFEGQDILQRSEAAMRAVRGKDVAMIFQE----PMTALNPLFTIGNQIAE--GLMLHEGL 116 Query: 121 RKRTDAV-----LSQLG---AAFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTA 172 R A+ L + G RA +LS ++Q+ IA AL + +++I DEPT Sbjct: 117 SARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTT 176 Query: 173 ALSERETEHLFGVVRRL-RDEGLAIIYISHRMAEVYALADRVTVLRDGSFVG-ELTREQI 230 AL + ++ +L R+E +A++ I+H + V ADRV V+ G V TRE Sbjct: 177 ALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELF 236 Query: 231 DSERIVQMMVGRSLGEFYQHQRMA--PEQ------AAALPT-----VLQVQDLAGGRVKP 277 + R E Y + +A P+Q +A+P V D+ G K Sbjct: 237 TAPR-----------ETYTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKT 285 Query: 278 ASFT--------VRAGEVLGFAGLVGAGRTELA-RLLFGADARSGGQILLGDQ---ALQI 325 F VR GE LG G G+G+T L LL + AR G I + A+Q Sbjct: 286 TPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQS 345 Query: 326 DEPRAAMRAGIAYVPEDRKGQGLFLQMAVGTNATMNVAGRHARLGLVRSRALRGVAQASI 385 D R +RA + V +D L + + +A +LG R + VA A Sbjct: 346 DALRP-LRARMQIVFQDPFA-SLSPRRTIEQIVGEGLALHQPQLGAAGIR--KAVADA-- 399 Query: 386 RRLNVKVAHPDVAV---GKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQ 442 L V + PD+ + SGG +Q++ +AR L + P +++LDEPT +D+ + ++ Q Sbjct: 400 -LLEVGLP-PDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQ 457 Query: 443 LIHKLAEQ-GVAVVVISSELPEIIGICDRVLVMREGSI 479 L+ +L ++ +A + IS +L I + RV+VM++G + Sbjct: 458 LLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKV 495 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 21 ALSEMHLTIRPGEIHALMGENGAGKSTL-MKVLSGVHAPDRGDILLDGKPVALRDPGASR 79 A+ ++ + +RPGE ++GE+G+GK+TL + +L A G I DGKP+ A R Sbjct: 290 AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALR 349 Query: 80 A--AGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRKRTDAVLSQLGAAFRA 137 A + +++Q+ + + +G L + A +RK L ++G Sbjct: 350 PLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPPDI 409 Query: 138 SDR-AGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALS-ERETEHLFGVVRRLRDEGLA 195 R S ++Q++ IAR LV + +V++DEPT++L + + L ++ + LA Sbjct: 410 MARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELA 469 Query: 196 IIYISHRMAEVYALADRVTVLRDGSFV 222 I+ISH +A + A+A RV V++DG V Sbjct: 470 YIFISHDLAVIRAMAHRVMVMKDGKVV 496 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 7 LQMTGISKSFGATRALSEMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDRGDILLD 66 L + G++ + L ++ + + PG+I ++G NGAGKSTL++ + G+ P +G+IL + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 67 GKPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRKRTDA 126 G+ +A A A+GI+ I + V P +SVA N+ +G+ L T + A +R+R Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVT-----NSAVVRER--- 115 Query: 127 VLSQLGAAF-----RASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEH 181 L+++ F RA+ AG +S EQ V I R L+ +++++DEP+ LS + Sbjct: 116 -LARVYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKE 174 Query: 182 LFGVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELTREQIDSE 233 F V+RR+ G+ ++ + + A++ VL G + E T E++ S Sbjct: 175 NFNVIRRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASN 226 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 9/204 (4%) Query: 279 SFTVRAGEVLGFAGLVGAGRTELARLLFGADARSGGQILLGDQALQIDEPRAAMRAGIAY 338 S V G++ G GAG++ L R + G G+IL + L ++ A + +GI+ Sbjct: 23 SIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWNGRNLAGEKTHAIIASGISC 82 Query: 339 VPEDRKGQGLFLQMAVGTNATMNVAGRHARLGLVRSRALRGVAQASIRRLNVKVAHPDVA 398 +PE RK +F +M+V N + A +VR R R RL + A Sbjct: 83 IPEGRK---VFPRMSVAENLALG-AFLVTNSAVVRERLAR--VYEIFPRLKERAAQ---L 133 Query: 399 VGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLIHKLAEQGVAVVVIS 458 G +SGG Q V + R L P++L++DEP+ G+ E + +I ++ G+ V+++ Sbjct: 134 AGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRINALGITVLLVE 193 Query: 459 SELPEIIGICDRVLVMREGSITGE 482 + + I V+ +G + E Sbjct: 194 QNARQTLAISHYGYVLSQGRVMAE 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 956,688 Number of extensions: 41724 Number of successful extensions: 408 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 76 Length of query: 529 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 443 Effective length of database: 716,977 Effective search space: 317620811 Effective search space used: 317620811 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)