BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0687.p (302 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 81 5e-17 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 76 3e-15 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 70 1e-13 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 70 2e-13 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 65 3e-12 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 113/252 (44%), Gaps = 18/252 (7%) Query: 25 ESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGES 84 E LR F A DA SF AA LG + I R +++LE A+ LF R +++T G Sbjct: 6 EMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFGTQ 65 Query: 85 VLNAAHAMQEQTRQL-ARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDV 143 + A M +L T D LEG +R+ IG L L L+ Q+P + + Sbjct: 66 LAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYPGIKL 125 Query: 144 EFALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWRRSRKSAP 203 E + + + ++ D+ +R G +D L+AR++G V F++ T VA + P Sbjct: 126 ELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVAT-----RGKP 180 Query: 204 FVAYD-DGVP-----DIPETR-WIATHAAGNPVRFRSTSLVA-----QCMAARAGVGLAL 251 D G+P D R W A P+ S +LV+ +C A AG+G Sbjct: 181 ITPQDLLGLPTTALMDGNTGRIWPWYFADSQPLTLTSPTLVSDDPEVECDAVLAGIGYGQ 240 Query: 252 LPSYLLAPELQT 263 L ++ P +++ Sbjct: 241 LSNHQAEPHIRS 252 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%) Query: 30 FAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGESVLNAA 89 FA + GS + AA+ LGVT ++ +RL +E L+ L R + LT GE L Sbjct: 10 FALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYLADG 69 Query: 90 HAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDVEFALAH 149 + + L + ++G ++ +G L+++ T G + P+L A +P +DV+ L Sbjct: 70 ARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLHLTD 129 Query: 150 QTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSA 190 + V+L + D +RFG+ D L AR + R +C + A Sbjct: 130 RPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPA 170 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 37/302 (12%) Query: 20 LQADWESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELT 79 + + + L++F A ID+G+ AA+ LG T + + R L +LE L L R +ELT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 80 RLGESVLNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLE--- 136 G L A A+ + + + G+LR+ DA L +P + E Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRI---DAAAPFILHAIVPHVAEFRA 117 Query: 137 QWPALDVEFALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWR 196 +P + +E Q L D+A+R G QD L ARAL A +L + + R Sbjct: 118 LYPQITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYL--QR 175 Query: 197 RSRKSAP----------FVAYDDGVPDIPETRWIATHAAG-----NPVRFRSTSLVAQCM 241 + P F+ ++ G W HA G P F S+ + + Sbjct: 176 HGMPTTPEQLAGHQLLGFLQFESG------NTWPIRHAGGEGLTVTPALFASSGETLRAL 229 Query: 242 AARAGVGLALLPSYLLAPELQTVESTPQLE-------RELWAVFHRDLKALPRLRAVLGW 294 A G G+A L Y+ ++ LE +++ AV++R+ + R+ L + Sbjct: 230 ALH-GQGIASLADYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEF 288 Query: 295 LQ 296 LQ Sbjct: 289 LQ 290 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 74/164 (45%) Query: 25 ESLRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGES 84 + + +F ++ SF+ AA AL VT +GRR+ LE L L R + LT G Sbjct: 5 KQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGSV 64 Query: 85 VLNAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDVE 144 L M + Q TL+ ++ G L ++ + G +AP LEQ P L + Sbjct: 65 YLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLKMS 124 Query: 145 FALAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGT 188 F L + V L + D+ +R G D +A L A + +CGT Sbjct: 125 FNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGT 168 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/303 (22%), Positives = 122/303 (40%), Gaps = 45/303 (14%) Query: 27 LRSFAAFIDAGSFSGAARALGVTHATIGRRLQQLETALQAPLFIRRADEVELTRLGESVL 86 +++F A ++A SF+ A L ++ A + + + LE L L R + LT G + Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 87 NAAHAMQEQTRQLARTLAGEDLRLEGKLRLACTDAIGTLFLAPRLPALLEQWPALDVEFA 146 + + + A G L++A + GT+ +AP L + ++P + ++ A Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 147 LAHQTVSLARREADLALRFGKPQDGELIARALGAVRFYLCGTSANVAAWRRSRKSAPFVA 206 LA + V L DLA+R G + LIAR L R LC + A + Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVH----------- 169 Query: 207 YDDGVPDIPE----------------TRWI----ATHAA---GNPVRFRSTSLVAQCMAA 243 G P PE W+ T AA P+R + ++ +AA Sbjct: 170 ---GAPQTPEDLKQHACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLR--LAA 224 Query: 244 RAGVGLALLPSYLLAPELQT------VESTPQLERELWAVFHRDLKALPRLRAVLGWLQD 297 G GL P +++A ++Q ++ E ++A++ ++R + +L Sbjct: 225 LDGAGLIWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVA 284 Query: 298 CCA 300 C A Sbjct: 285 CMA 287 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 586,627 Number of extensions: 23635 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 7 Length of query: 302 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 221 Effective length of database: 733,452 Effective search space: 162092892 Effective search space used: 162092892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)