BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0686.p
         (446 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA m...   754   0.0  
gi|134095120|ref|YP_001100195.1| ribosomal protein S12 methylthi...   148   6e-37

>gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA
           methylthiotransferase [Herminiimonas arsenicoxydans]
          Length = 446

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/446 (78%), Positives = 402/446 (90%)

Query: 1   MQKKVFIKTFGCQMNEYDSDKMADVLNVAEGLIKTDRPEEADVILLNTCSIREKAQEKVF 60
           MQKK++IKTFGCQMNEYDSDKMADVLN ++GLIKTD+ E+ADVILLNTCS+REKAQEKVF
Sbjct: 1   MQKKIYIKTFGCQMNEYDSDKMADVLNASDGLIKTDKAEDADVILLNTCSVREKAQEKVF 60

Query: 61  SDLGRLRALKKDKPDLLIGVGGCVASQEGEAIIKRAPFVDMVFGPQTLHRLPQMISERRY 120
           SDLGRLR LK  KPDL+IGVGGCVASQEG+AIIKRAP+VD+VFGPQTLHRLP+M+ +RR 
Sbjct: 61  SDLGRLRELKLLKPDLMIGVGGCVASQEGDAIIKRAPYVDLVFGPQTLHRLPEMLKQRRS 120

Query: 121 SGRPQVDISFPEIEKFDHLPPARVEGATAYVSIMEGCSKYCSYCVVPYTRGEEVSRRFED 180
           +GR QVDISFPEIEKFDH+PPA+VEGATA+VSIMEGCSKYCSYCVVPYTRGEEVSRRF+D
Sbjct: 121 TGRSQVDISFPEIEKFDHMPPAKVEGATAFVSIMEGCSKYCSYCVVPYTRGEEVSRRFDD 180

Query: 181 VLTEVAGLADQGVKEIMLLGQNVNAYRGTMEDGEIADFALLIEYIAELPGIERIRFVTSH 240
           VLTEVAGL  QGVKEI LLGQNVNAYRG M DGEIADFALLIEYIAE+ GIERIR+VTSH
Sbjct: 181 VLTEVAGLEAQGVKEITLLGQNVNAYRGEMADGEIADFALLIEYIAEMEGIERIRYVTSH 240

Query: 241 PKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSVIRRMRKVRPDI 300
           PKEF+QRLIDTYAKVPKL +HLYLPAQHGSDR LAAMKRGYT+LEYKS++RR+R VRP+I
Sbjct: 241 PKEFTQRLIDTYAKVPKLVDHLYLPAQHGSDRILAAMKRGYTSLEYKSILRRLRAVRPNI 300

Query: 301 TVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSPRPGTPAANLQDDTPAEVKLA 360
           ++ SDFIVGFPGET+EDFEA+MKL+ D+G+DNSFSFIFSPRPGTPAANL DDTP EVKL 
Sbjct: 301 SISSDFIVGFPGETDEDFEAMMKLIDDIGYDNSFSFIFSPRPGTPAANLADDTPHEVKLK 360

Query: 361 RLQRLQAALNDNAAKISAAQVGTVQRVLVEGVSKRREHELQGRTESNRVVNFDGGPNGQR 420
           RLQRLQA ++ N  + S   VG+VQR+LVEG SK+   ELQGRTE+NRVVNF  GPN   
Sbjct: 361 RLQRLQAVIDQNTRRYSDEMVGSVQRILVEGPSKKDADELQGRTENNRVVNFSAGPNAAH 420

Query: 421 LIGQIIEVSITEAFPFSLRGQIVTQH 446
           LIGQ++ V+IT++  ++LRG+IV + 
Sbjct: 421 LIGQMVNVNITQSHAYTLRGEIVVKQ 446


>gi|134095120|ref|YP_001100195.1| ribosomal protein S12
           methylthiotransferase [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  148 bits (373), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 210/449 (46%), Gaps = 32/449 (7%)

Query: 4   KVFIKTFGCQMNEYDSDKMADVLNVAEGLIKTDRPEEADVILLNTCSIREKAQEKVFSDL 63
           K+   + GC     DS+++   L  AEG       + AD++++NTC   + A ++    +
Sbjct: 10  KIGFVSLGCPKALVDSEQILTQLR-AEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAI 68

Query: 64  GRLRALKKDKPDLLIGVGGCVASQEGEAIIKRA-PFVDMVFGPQTLHRLPQMISERRYSG 122
           G   AL ++   ++ G  G      G+ II++  P V  V GP  L  +   +       
Sbjct: 69  GE--ALHENGRVIVTGCLGAKKDANGDDIIQKVHPKVLAVTGPHALGEVMDAV------- 119

Query: 123 RPQVDISFPEIEKFDHLPPARVEGAT---AYVSIMEGCSKYCSYCVVPYTRGEEVSRRFE 179
              + +  P     D LPP  ++      AY+ I EGC+  CS+C++P  RG+ VSR   
Sbjct: 120 --HLHMPKPHAPFLDLLPPQGIKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIA 177

Query: 180 DVLTEVAGLADQGVKEIMLLGQNVNAY------RGTMEDGEIADFAL--LIEYIAEL--P 229
           DV+ E   L   GVKE++++ Q+ +AY      R    +G+     +  L+E + EL  P
Sbjct: 178 DVMMEAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPVKTHMTQLVEALGELAAP 237

Query: 230 GIERIRFVTSHPKEFSQRLIDTYAKVPKLCNHLYLPAQHGSDRTLAAMKRGYTALEYKSV 289
               +R    +P      +I   A+  K+  +L +P QH     L  MKR  +  +    
Sbjct: 238 YGAWVRLHYVYPYPHVDAIIPMMAE-GKILPYLDVPLQHAHPDVLKRMKRPASGEKNIER 296

Query: 290 IRRMRKVRPDITVQSDFIVGFPGETEEDFEALMKLVADVGFDNSFSFIFSPRPGTPAANL 349
           I+  R + PD+T++S FI GFPGETE +FE L+  + +   D    F +SP  G  A +L
Sbjct: 297 IQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANDL 356

Query: 350 QDDTPAEVKLARLQRLQAALNDNAAKISAAQVGTVQRVLVEGVSKRREHELQGRTESNRV 409
            +  P EV+  R  R+     + + K   A+VG   RVL++ V++      +   ++  +
Sbjct: 357 PNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLIDEVNRTGAATARSGADAPEI 416

Query: 410 -----VNFDGGPNGQRLIGQIIEVSITEA 433
                V     P+ +  +G+ ++V IT A
Sbjct: 417 DGVVYVKAPYEPHIKYKVGEFVDVKITGA 445


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 796,838
Number of extensions: 31875
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 361
Effective length of database: 720,272
Effective search space: 260018192
Effective search space used: 260018192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)