BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0685.p
         (372 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093657|ref|YP_001098732.1| phosphate starvation-inducible ...   491   e-140
gi|134095340|ref|YP_001100415.1| hypothetical protein HEAR2155 [...    99   2e-22

>gi|134093657|ref|YP_001098732.1| phosphate starvation-inducible
           protein [Herminiimonas arsenicoxydans]
          Length = 330

 Score =  491 bits (1263), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/315 (74%), Positives = 276/315 (87%), Gaps = 7/315 (2%)

Query: 28  LDENLRQISAALDVTIFRRGDRFVVTGTNAERAVEVLERFYEKADRPVAVDDIQLALVEQ 87
           +DENLRQISAALDVTIFRRG++F+++G+N  RA+E+L++FY  AD+ V ++++QLALVEQ
Sbjct: 1   MDENLRQISAALDVTIFRRGEKFIISGSNGARALEILDQFYRVADKVVPLEEVQLALVEQ 60

Query: 88  RANAAADEEAGLPPLPARRGKAAAAAAEEEKDSQDPLPESPILKTRKHDLRGRTPHQSQY 147
           RA+ A       P L    GK  A     +K   + + ++P+LKTR+HDLRGRTPHQ QY
Sbjct: 61  RASLAE------PELIISAGKKTAGKTAGKK-VVESVTDAPVLKTRRHDLRGRTPHQLQY 113

Query: 148 LNAILEHDITFGVGPAGTGKTYLAVACAVDALERDAVQRIVLTRPAVEAGERLGFLPGDL 207
           L AI++HDITFGVGPAGTGKTYLAVACAVDALERDAV+RI+LTRPAVEAGERLGFLPGDL
Sbjct: 114 LKAIMDHDITFGVGPAGTGKTYLAVACAVDALERDAVKRIILTRPAVEAGERLGFLPGDL 173

Query: 208 AQKVDPYLRPLYDALYDLLGFDRTQKLFEKQAIEIAPLAYMRGRTLNHAFIILDEAQNTT 267
           +QK+DPYLRPLYDALYDLLGFDRTQK+FEKQAIEIAPLAYMRGRTLNHAF+ILDEAQNTT
Sbjct: 174 SQKIDPYLRPLYDALYDLLGFDRTQKMFEKQAIEIAPLAYMRGRTLNHAFVILDEAQNTT 233

Query: 268 PEQMKMFLTRIGFGSKAVITGDVTQVDLHHGQKSGLVDALSVLHDVRGIAFSRFTSADVV 327
           PEQMKMFLTRIGFGSKAVITGD+TQ+DL   QKSGL++A+ VL DVRG+AF+RF+SADVV
Sbjct: 234 PEQMKMFLTRIGFGSKAVITGDITQIDLQQNQKSGLIEAIDVLGDVRGLAFTRFSSADVV 293

Query: 328 RHPLVARIVDAYDAA 342
           RHPLVARIVDAYD A
Sbjct: 294 RHPLVARIVDAYDEA 308


>gi|134095340|ref|YP_001100415.1| hypothetical protein HEAR2155
           [Herminiimonas arsenicoxydans]
          Length = 554

 Score = 99.4 bits (246), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 13/177 (7%)

Query: 130 LKTRKHDLRGRTPHQSQYLNAIL--EHDITFGVGPAGTGKTYLAVACAV-DALERDAVQR 186
           +K     +  R   Q+  LN ++  E D    +G AGTGKT LA+A  +   LE      
Sbjct: 334 MKNSVWGVTARNREQNFALNLLMDPECDFVTLLGQAGTGKTLLALAAGLAQVLETKLYSE 393

Query: 187 IVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDL---------LGFDRTQKLFEK 237
           I++TR  V  GE +GFLPG   +K+ P++    D L  L          G   TQ L  +
Sbjct: 394 IIVTRVTVPVGEDIGFLPGTEEEKMSPWMGAFDDNLEVLNKSDNDAGEWGRAATQDLI-R 452

Query: 238 QAIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVD 294
             I+I  L +MRGRT  + F+I+DEAQN TP+QMK  +TR G G+K +  G++ Q+D
Sbjct: 453 SRIKIKSLNFMRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIICLGNIAQID 509


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 676,190
Number of extensions: 27334
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 289
Effective length of database: 726,862
Effective search space: 210063118
Effective search space used: 210063118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)