BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0684.p
         (151 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093656|ref|YP_001098731.1| hypothetical protein HEAR0379 [...   190   3e-50

>gi|134093656|ref|YP_001098731.1| hypothetical protein HEAR0379
           [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  190 bits (483), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 125/153 (81%), Gaps = 5/153 (3%)

Query: 1   MPKPKLTLSVQYADDRLKDTITRPLLRRWVQAALFAPAELTLRFVGTEEGRDLNRDYRGK 60
           M + KL+LSVQYAD R++D +TRPLLR+WV+AAL APA++TLRFV   EG+ LNR+YRGK
Sbjct: 1   MQQNKLSLSVQYADTRVQDILTRPLLRKWVKAALLAPAQITLRFVDAAEGQILNRNYRGK 60

Query: 61  DYATNVLTFAYTEDEDSE-----VTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVL 115
           DYATNVLTF Y +D+ S+     VT+ADII CTDVL++EAAEQ K++  H AHLV+HGVL
Sbjct: 61  DYATNVLTFTYNDDDGSDIADDAVTQADIILCTDVLQREAAEQNKTLIFHAAHLVIHGVL 120

Query: 116 HAQGYDHEDDAEATEMEALETEILAALGYDNPY 148
           HAQGYDHE D EA EMEALE E LAALG+ NPY
Sbjct: 121 HAQGYDHESDEEAEEMEALEIEFLAALGFPNPY 153


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,954
Number of extensions: 8555
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 77
Effective length of database: 756,517
Effective search space: 58251809
Effective search space used: 58251809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)