BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0683.p
         (292 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093655|ref|YP_001098730.1| integral membrane protein [Herm...   446   e-127
gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187 [...   112   2e-26

>gi|134093655|ref|YP_001098730.1| integral membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score =  446 bits (1146), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/292 (73%), Positives = 252/292 (86%), Gaps = 2/292 (0%)

Query: 1   MQDHPSSVK-SDAKPHRSLFERLTALISPEPENRAELLEVLHDAHERNLIDADALSMIEG 59
           MQD+P+S K  +AKPHRSLFERLTALI+PEP++R+ELL +LHDAHERNLIDADALSMIEG
Sbjct: 1   MQDNPNSGKPGEAKPHRSLFERLTALIAPEPDSRSELLAILHDAHERNLIDADALSMIEG 60

Query: 60  VFQVSDLAVRDIMVPRSQMDTIDISKPIETWMPEVLATSHSRFPAIDGERDKVIGILLAK 119
           VFQVS+L+ RDIMVPRSQMD IDI+KPI  W+P VL T+HSRFPAI+GERD+V+GIL+AK
Sbjct: 61  VFQVSELSARDIMVPRSQMDVIDITKPIAEWLPMVLETAHSRFPAIEGERDQVVGILMAK 120

Query: 120 DLLRYYAEESFDVRDMLRPAIFIPESKRLNVLLRDFRANRNHMAVVVDEYGGVAGLITIE 179
           DLLRYYA  SFDVR MLRPA+FIPESKRLNVLL DFRA  NHMA+VVDEYGGVAGLITIE
Sbjct: 121 DLLRYYAGASFDVRQMLRPAVFIPESKRLNVLLSDFRAKHNHMAIVVDEYGGVAGLITIE 180

Query: 180 DVLEQIVGDIEDEYDFDEAEDNVLALKDGPNGACWRVKALTEIEQFNEEVGSRFSDEDAD 239
           DVLEQIVGDIEDEYDFDE +DN+LA+K G  G  WR+KALTE+ Q NEE+G+  + +D D
Sbjct: 181 DVLEQIVGDIEDEYDFDEEQDNILAIKAGEYGPRWRIKALTELTQVNEELGTALTSQDVD 240

Query: 240 TIGGLVANHVGRVPRKGDEFDIDGLHFEVLRADARQVHVLLVSQLPPTPVAD 291
           T+GG + NH+ R+P KG+  DID L FE+LRADARQ+HVLLV +L P P AD
Sbjct: 241 TLGGFITNHLARMPHKGEVIDIDNLRFEILRADARQIHVLLVEKL-PAPDAD 291


>gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 133/266 (50%), Gaps = 21/266 (7%)

Query: 35  ELLEVLHDAHERNLIDADALSMIEGVFQVSDLAVRDIMVPRSQMDTIDISKPIETWMPEV 94
           E+  ++ +  +  L +     ++    ++ D  V  +M PR  +  ID+   IET + ++
Sbjct: 161 EIAGLIREGTDAGLFEKTEHDIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKI 220

Query: 95  LATSHSRFPAIDGERDKVIGIL----LAKDLLRYYAEESFDVRDMLRPAIFIPESKRLNV 150
             +S++RFP   G    +IGI+    L + ++R     S D+    RP +F+PE+     
Sbjct: 221 ADSSYNRFPVCRGNISHIIGIVHAGSLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQ 280

Query: 151 LLRDFRANRNHMAVVVDEYGGVAGLITIEDVLEQIVGD---IEDEYDFDEAEDNVLALKD 207
           LL   + NR  +A+V+DEYG + G++T+ DVL  +VGD   I++ ++ D    +     D
Sbjct: 281 LLETLKKNRAELALVIDEYGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRD-----D 335

Query: 208 GPNGACWRVKALTEIEQFNE--EVGSRFSDEDAD---TIGGLVANHVGRVPRKGDEFDID 262
           G     W +      ++F E  E   RF +E +    T+ G V   +G +P+  D F+ +
Sbjct: 336 G----SWLIDGGVSFDRFRELLETDVRFPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWE 391

Query: 263 GLHFEVLRADARQVHVLLVSQLPPTP 288
           G   EV+  D  ++  LL++++ P P
Sbjct: 392 GYRIEVVDMDRNRIDRLLITKIDPPP 417


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 569,710
Number of extensions: 24041
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 211
Effective length of database: 733,452
Effective search space: 154758372
Effective search space used: 154758372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)