BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0682.p
         (541 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093654|ref|YP_001098729.1| apolipoprotein N-acyltransferas...   481   e-137

>gi|134093654|ref|YP_001098729.1| apolipoprotein N-acyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score =  481 bits (1237), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/405 (62%), Positives = 294/405 (72%), Gaps = 16/405 (3%)

Query: 119 GLYAGAATALAGWLRKRWSSSPLVLALFMLPALWALSEWTRGWVFTGFPWLVSGYAHTVG 178
           G +   AT  A + + R  +S  +L L + PALW LSEW RGWV TGFPW+VSGYAHT  
Sbjct: 14  GAFFAIATGFAAYFKHRRHASTTILLLLVFPALWMLSEWLRGWVLTGFPWVVSGYAHTAS 73

Query: 179 PLAAFAPIGGVYFVGWVASLIAGSLALLWMGLCRKGVAGTGQRIILPMCIAALLCAAGVA 238
           PL  FAP+ GVY +GW+A+L+AG LA   +   RK          L + IA  + AAG A
Sbjct: 74  PLTGFAPLIGVYGLGWLAALLAGCLA---LLPTRKSA--------LVLMIA--IFAAGFA 120

Query: 239 LRMVKWTAPQGRPITVRLLQGNIPQEMKFSNDALVSTLSMYEQMISAAPADLIATPETAI 298
           L  + WT P G PI+VRLLQGN+PQE+KF  +    TL++YE MI +APADLIATPETA+
Sbjct: 121 LHSISWTTPHGAPISVRLLQGNVPQEIKFDPEQANVTLTLYEDMIRSAPADLIATPETAL 180

Query: 299 PLLPQQLPPDYLERIARFVQNSGSHLALGIPLSDGPQLYANSVLGFGPGVGSALQP--YR 356
           PLL  QLP DYL R+A F   S SHLA+GI +SDGPQ YANSV+G  P   S   P  YR
Sbjct: 181 PLLAHQLPEDYLPRLAEFATASSSHLAIGIAVSDGPQQYANSVIGITPATASRTVPALYR 240

Query: 357 YDKHHLVPFGEFIPPGFRWFVDLMHIPLGDMTRGAPVQSPFGVKDQWVLPNICYEDLFGE 416
           YDKHHLVPFGEFIP GFRWFVD+MHIPLGD TRGA +Q+PF VKDQWVLPNICYEDLFGE
Sbjct: 241 YDKHHLVPFGEFIPLGFRWFVDMMHIPLGDFTRGATLQAPFAVKDQWVLPNICYEDLFGE 300

Query: 417 EIAGQLRDAYRAAQPQASVLLNLSNIAWFGNSIALPQHLQISTMRTLETGRPMLRATNTG 476
           EIAGQLR +  A  P A++LLN+SNIAWFG+SIALPQHLQIS MR +ETGRPMLRATNTG
Sbjct: 301 EIAGQLRASTAAGNPAATLLLNVSNIAWFGDSIALPQHLQISQMRAIETGRPMLRATNTG 360

Query: 477 ATAVILP-GGATSELAPYTRGVLAGQVQGYGGQTPYILLGNKLIV 520
            TAVI P G   ++L P+ RG+L   VQGY G TPY+ LGN  IV
Sbjct: 361 TTAVINPHGEVVAQLKPFERGILTASVQGYSGLTPYVSLGNAAIV 405


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,064,255
Number of extensions: 46315
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 455
Effective length of database: 716,977
Effective search space: 326224535
Effective search space used: 326224535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)