BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0680.p
         (706 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093652|ref|YP_001098727.1| glycine tRNA synthetase subunit...   697   0.0  

>gi|134093652|ref|YP_001098727.1| glycine tRNA synthetase subunit
           beta [Herminiimonas arsenicoxydans]
          Length = 708

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/710 (56%), Positives = 488/710 (68%), Gaps = 17/710 (2%)

Query: 2   NQTLLVELVTEELPPKALAKLGDAVANGIFNGLQSRGYLEADAVATAYATPRRLAVSISK 61
            + LL+EL  EELPPKAL K+GDA A  +   L+++G L  D+V T +A+PRRL V +++
Sbjct: 11  TKNLLIELFVEELPPKALKKIGDAFAQLLQASLKTQGLLSTDSVLTQFASPRRLGVHLTQ 70

Query: 62  VRAASPDKSIREKVLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGKA 121
           V   + DK + +K++P SV L A+G+ +  L+KKL+AL A+  A       L+R  DGKA
Sbjct: 71  VAEQADDKQVMQKLMPASVGLTADGKATPALLKKLSALGANESAVA----GLKRESDGKA 126

Query: 122 ESFFYTYTAKGSALAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLVA 181
           E  F+     G  LA GLQ AL+E+L+KLPIPKVM YQ   G    ETV+FVRPAH LVA
Sbjct: 127 EVLFFNSIVTGVTLADGLQKALEETLAKLPIPKVMGYQLADG---WETVNFVRPAHGLVA 183

Query: 182 LFGNDVVPINTLGLDAGRTTLGHRFLSS-GALQIASPDAYVEALATQGKVIASFTERREK 240
           L G DV+ ++ LGL AG TT GHRF +    + I   D+Y + +AT+G VIASF ERR +
Sbjct: 184 LHGADVINVSALGLTAGNTTRGHRFEAGLDPVYIRDADSYAKQIATEGAVIASFAERRAE 243

Query: 241 IRAALLAKAG-ADQVLMP---ESLLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQT 296
           I   L A A  A   L P   E LLDEVT LVE P V   +FE+ FLAVPQECLILTM+ 
Sbjct: 244 IVRQLAAAASEAGDNLTPIEDEDLLDEVTGLVERPNVLIGQFEETFLAVPQECLILTMKA 303

Query: 297 NQKYFALTDANGRLRSRFLIVSNLETDRPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLA 356
           NQKYF L D+ G L ++FLIVSN+       +IGGNERVVRPRL+DAKFFF+QD+KKTLA
Sbjct: 304 NQKYFPLLDSKGNLSNKFLIVSNIRPADASLVIGGNERVVRPRLADAKFFFDQDRKKTLA 363

Query: 357 ERVPQLANVVYHNKLGNQLQRTERVQALAGKIAALLGGDVTQAERGALLAKADLLTDMVG 416
            RV  L  VVYHNKLG Q +R  RV+A+A  IAA LG DV QA+  A LAKADLLTDMVG
Sbjct: 364 SRVAGLDKVVYHNKLGTQGERIARVRAIAQAIAAKLGIDVQQADTAAQLAKADLLTDMVG 423

Query: 417 EFPELQGIMGTYYARHDGEPDEVALAASEHYQPRFAGDALPGTATGTAVALADKLETLVG 476
           EFPELQGIMG YYA HDG  + VA A  +HY+PRFAGD LP    G  VALADKLETLVG
Sbjct: 424 EFPELQGIMGRYYALHDGLAENVADAIEDHYKPRFAGDTLPRNPVGMVVALADKLETLVG 483

Query: 477 IWGIGLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLNALLEAAVALFAGNPNFKDPRAE 536
           ++ IG  PTGDKDPFALRRHALGV+RML+E +L + +N L+ AA   F  N    + R  
Sbjct: 484 LFSIGQIPTGDKDPFALRRHALGVIRMLIEGKLDIGINELIAAAEQPF--NKLAIEHRDA 541

Query: 537 VQAFIHDRLRGLLRERGFAQNEVEAVVAQQPDVLDNVVERLQAVQAFAALPEAEALAAAN 596
           +  FI DRL   LRE+G++  E++AV+A QP  L +V  RL AV+AFA LPEA ALAAAN
Sbjct: 542 LITFIFDRLANALREQGYSAQEIDAVLALQPQKLADVASRLAAVRAFAVLPEAPALAAAN 601

Query: 597 KRITNILKKIEGVAIDAHGAVQQNLLKEAAEQGLFAAMQTTRPQVEAAYAQGDFAGALKA 656
           KR+ NILKK+EG   +    V   LLKEAAE  L   + T +PQ + A+A+GD+A +L+ 
Sbjct: 602 KRVGNILKKVEG---EVTAKVDPALLKEAAEIALNQTLTTVKPQADTAFARGDYAASLQV 658

Query: 657 LAQLRQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706
           LA L+  VDAFF  VMVNA+D  LR NR  LLA LH  +NQVADISKLAA
Sbjct: 659 LAALKTPVDAFFESVMVNADDAALRNNRLGLLATLHHAMNQVADISKLAA 708


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,186,988
Number of extensions: 47518
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 618
Effective length of database: 710,387
Effective search space: 439019166
Effective search space used: 439019166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)