BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0672.p (531 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 177 2e-45 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 167 8e-43 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 166 2e-42 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 162 3e-41 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 160 2e-40 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 137/235 (58%), Gaps = 4/235 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+ AL L+ QP I LR G + G E L RW P+RG+++P+DFI +AE GL+ Sbjct: 567 DLWHALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIP 626 Query: 69 LLLQLLDTVADSLRHWPAD----LRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + + +L+T + +R+AINLS RQ D + +E + +V+ A GL L+L Sbjct: 627 IGIWVLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLEL 686 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TES ++ + E + T+ + G LSLDDFGTG+SSL L+ +P D +KID SF+ Sbjct: 687 EVTESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFN 746 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRP 239 D DP I + L LK+ V+AEGVE S H LK+ GC+ GQG+ + RP Sbjct: 747 CDSDPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRP 801 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 167 bits (424), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 140/246 (56%), Gaps = 6/246 (2%) Query: 10 IRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTL 69 +R AL+ L A QP + L G + GFE+L RW+ P+ G++SP +FI +AE +G++ + Sbjct: 578 LRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAETSGMVVPI 637 Query: 70 LLQLLDTVADSLRHWPA------DLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQ 123 + ++ L W A D+ +A+N+S RQ L TS ++ ++ + G+ ++ Sbjct: 638 GMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSGVVPHTIE 697 Query: 124 LEITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVR 183 LE+TE+S + + +T++ + + G L+LDDFGTGYSSL LQ P D +KID +FV Sbjct: 698 LELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILKIDKTFVH 757 Query: 184 TMDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLA 243 + I+ + L Q+L + VAEGVET H + L+ MGC+ GQGF P Sbjct: 758 GLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDLGQGFIFSPPLSAE 817 Query: 244 EAARLI 249 EA LI Sbjct: 818 EAETLI 823 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 141/249 (56%), Gaps = 5/249 (2%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+R AL+ QP + LR+G+I G E L RW P+ G+V PV FI +AE+ GL+ Sbjct: 687 DLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLIVP 746 Query: 69 LLLQLLDTVADSLRHWP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + ++ T + W LR+++NLS RQF L++ ++ + L L++ Sbjct: 747 IGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYLEI 806 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TES ++ D +R + +R + G LS+DDFGTGYSSL+ L+ +P D +KID SFV Sbjct: 807 ELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVND 866 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRPAPLAE 244 + DPD IV +V L SL++ V+AEGVET L+ C+ QG+ RP AE Sbjct: 867 ITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVT-AE 925 Query: 245 AARLIEQQG 253 A ++ + G Sbjct: 926 AFSVMLKDG 934 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 133/235 (56%), Gaps = 4/235 (1%) Query: 9 DIRTALDAGHLWPALQPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDT 68 D+R AL+ QP + G + G E L RW P RG+++P DFI +AE GL+ Sbjct: 444 DLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEKTGLIVP 503 Query: 69 LLLQLLDTVADSLRHWPAD----LRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQL 124 + +LD +R W + ++A+NLS QF + L+E + T + + P S L L Sbjct: 504 IGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFPASGLIL 563 Query: 125 EITESSLVQDHERTLQTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRT 184 E+TES+ + D E +L + G +S+DDFGTGYSSL L+ P E+KID F+R Sbjct: 564 EVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKIDRGFIRD 623 Query: 185 MDQDPDSFRIVLAVAGLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRP 239 + Q + IV A+ LG+SL +H+VAEGVET L+ +GC+ QG+ +GRP Sbjct: 624 LAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGRP 678 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 5/220 (2%) Query: 24 QPLIHLRTGRIAGFEMLARWSCPQRGVVSPVDFITVAEDAGLLDTLLLQLLDTVADSLRH 83 QP I+L G I G E L RW+ + G+VSP FI +AE+ GL+ + + +L+T R Sbjct: 480 QPKINLANGDIIGAEALIRWNSAE-GMVSPGSFIPLAEETGLIIPIGVWVLETACRQNRA 538 Query: 84 WP----ADLRLAINLSPRQFLDTSLLERLSTVMHAHGLPLSRLQLEITESSLVQDHERTL 139 W A + +++NLS RQ ++E++ V+ GL L+LEITES + D E++ Sbjct: 539 WQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQYLELEITESVMASDVEKSF 598 Query: 140 QTIRAARQAGASLSLDDFGTGYSSLTRLQSYPFDEIKIDASFVRTMDQDPDSFRIVLAVA 199 + R G +SLDDFGTGYSSL+ L+ +P D +KID SFVR + DS IV A+ Sbjct: 599 ALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDLATSQDSAAIVKAII 658 Query: 200 GLGQSLKMHVVAEGVETSHHAHLLKRMGCEFGQGFHLGRP 239 LG +L + V+AEG+ET L + C GQG+ + RP Sbjct: 659 SLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRP 698 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,023,186 Number of extensions: 42661 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 15 Length of query: 531 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 445 Effective length of database: 716,977 Effective search space: 319054765 Effective search space used: 319054765 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)