BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0669.p
         (340 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093646|ref|YP_001098721.1| 4-hydroxythreonine-4-phosphate ...   474   e-135

>gi|134093646|ref|YP_001098721.1| 4-hydroxythreonine-4-phosphate
           dehydrogenase [Herminiimonas arsenicoxydans]
          Length = 344

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/328 (74%), Positives = 272/328 (82%), Gaps = 1/328 (0%)

Query: 2   NRPILALTCGEPAGIGPEISLRAAWALRHEARCILLGDAALLAQTAYDIDAQMRVAALSL 61
            RP +A+TCGEPAGIGPEIS+RAAW LR + + IL+GDAA LA  A  I+  + ++ALS 
Sbjct: 3   KRPTIAITCGEPAGIGPEISIRAAWELRADVKSILIGDAAFLAMIAGAINPDIHLSALSW 62

Query: 62  QAWRNSGLPHFPLDCLTVIDCPVAEPVRPGVLDSRNGRAVLQTLDVAVQGALDGAFAAIV 121
           QA RNSGLP FP D +TVIDCP+A  V PG LD++NGR VLQTLD+A+ GA+   F AIV
Sbjct: 63  QAVRNSGLPAFPRDQITVIDCPLAAHVVPGRLDAQNGRYVLQTLDIAIDGAMQHWFDAIV 122

Query: 122 TAPLQKSTINDAGVAFTGHTEYLAEATRTPQVVMMLA-GGDAPYLRVALATTHLALKDVP 180
           TAPLQKSTINDAGV FTGHTEYLA+ T T QVVMMLA       LRVALATTHLALKDV 
Sbjct: 123 TAPLQKSTINDAGVPFTGHTEYLADKTATKQVVMMLATNATLQPLRVALATTHLALKDVA 182

Query: 181 AAITADSLARTLDILQADLRGKFGIARPRILVTGLNPHAGENGYLGREEIEVITPALEAA 240
           AAIT DSLA  +DIL ADL+ KFGIA+PRILVTGLNPHAGE GYLGREEI+VITP L+AA
Sbjct: 183 AAITFDSLAGIIDILHADLQQKFGIAKPRILVTGLNPHAGEGGYLGREEIDVITPVLQAA 242

Query: 241 RARGIDARGPYPADTLFQPKYLEQADCVLAMYHDQGLPVLKFASFGHGINITLGLPIIRT 300
           +A+G D RGPYPADTLFQ K L  ADCVLAMYHDQGLPVLK+ASFG G+NITLGLPIIRT
Sbjct: 243 QAKGYDVRGPYPADTLFQQKLLAGADCVLAMYHDQGLPVLKYASFGLGVNITLGLPIIRT 302

Query: 301 SVDHGTALDLAAAGLGQADHGSMVAAIR 328
           SVDHGTALDLAAAGLGQADHGSM+ AIR
Sbjct: 303 SVDHGTALDLAAAGLGQADHGSMLEAIR 330


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 631,886
Number of extensions: 26208
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 258
Effective length of database: 730,157
Effective search space: 188380506
Effective search space used: 188380506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)