BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0667.p
         (760 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093644|ref|YP_001098719.1| putative tolerance transmembran...   721   0.0  

>gi|134093644|ref|YP_001098719.1| putative tolerance transmembrane
           protein [Herminiimonas arsenicoxydans]
          Length = 639

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/646 (54%), Positives = 462/646 (71%), Gaps = 28/646 (4%)

Query: 127 MNMGTGAGYVTNPTYLLGKSGGRGHAKRIDFLSDDQAKVTQGTYSTCEAPDPDWYLRSNT 186
             M  G GYVTNPTY +  +  +G A+RIDF ++D+A +TQGTYSTCE PDPDWYL+SNT
Sbjct: 3   FKMDEGTGYVTNPTYHMQGNNAQGRAERIDFEAEDRALITQGTYSTCEGPDPDWYLKSNT 62

Query: 187 MDLDSGRDVGTMHGGLLYFKDVPILGSPWMSFPLSGERKSGVLPPTIGMTSTGGAEVAVP 246
           M LD+G+DVGT    ++YFKDVPILG+P+MSFPLS  RKSG+L PT+G TSTGG E+ VP
Sbjct: 63  MHLDTGKDVGTAGTTVIYFKDVPILGTPYMSFPLSDARKSGILVPTMGTTSTGGFELMVP 122

Query: 247 YYFNLAPNYDLTLVPKYIARRGLQLGAETRYMGDGYSGVTNVEGI-QDRVTGTGRYSLSS 305
           YYFN+APN DLTL PKYIARRG QLGA+ RY+   Y+G T +E +  D  T T RYS++S
Sbjct: 123 YYFNIAPNRDLTLFPKYIARRGFQLGADARYLDRDYAGETKIEFLPNDTQTKTNRYSIAS 182

Query: 306 IHNQTLAPGLQLAWNLNKASDNDYPSDFSHSITGSTQRLLPRNVSLSYSSTYWNVTGLVS 365
            HNQ L+P     WN+  ASD+DY  DFS ++  ST+RLL R++  +Y+  +WN T   S
Sbjct: 183 THNQRLSPQASFGWNVKAASDDDYAIDFSRNLATSTERLLLRDLYFNYAGNFWNATARAS 242

Query: 366 KYQLLQDVNAPIAQPYDRVPQITFNGTRYDVGGFDFNTVADFTRFASGSLIGGDRSYVTQ 425
            YQ+LQDV API +PYDR+PQ+T    R DV GFD+ T  + TRF    L+ G+R  +  
Sbjct: 243 NYQVLQDVLAPITRPYDRLPQLTLQAGRQDVNGFDWATTVEATRFWHPDLVRGERYVLNP 302

Query: 426 TVSYPIVRPGYFITPKVILDATSYNLNNVAVGQHTNLTRTVPTFSLDSGLIFERESTLLG 485
           ++SYPIVRP YFITPKV L+A SY++ N     + + +RT+PTFSLDSGLIFERE+++ G
Sbjct: 303 SISYPIVRPSYFITPKVSLNAASYSVENPLTRTNASYSRTLPTFSLDSGLIFERETSIFG 362

Query: 486 RSMTQTLEPRLFYVRTPFRDQSQFPVFDSGLADFNFAQIFTENRFVGHDRISDANQLTAA 545
            + TQTLEPRLFYV+TP+R+Q+  PVFDS  AD +FAQIF+ENRF+G+DRIS+ANQLT A
Sbjct: 363 EAATQTLEPRLFYVKTPYRNQAN-PVFDSAEADLSFAQIFSENRFIGNDRISNANQLTTA 421

Query: 546 VTSRLIEENGLERLRAAIGQRYYFSDPQVSIAGTTSTDLGSKSDLLLSLGGQITREFSTD 605
           + SR IE +G ERLR A+ QR+YF D +V++ G      GSKSD+L S   +I+   ST+
Sbjct: 422 LVSRYIEPSGAERLRVALAQRFYFEDQKVALPGVVPQG-GSKSDILGSGTLRISNALSTE 480

Query: 606 NTVQYSETLRQMVRSTFGIRWQPAPKRVLNLQYRLDRTYINPYTGLLDPLRQVDVSGQWP 665
             +QYS T + + R    + W+P PK+VLNL YR+D         + + LRQVDVSGQWP
Sbjct: 481 GNLQYSSTQKTVSRGNASVSWRPEPKKVLNLAYRVD---------VPNALRQVDVSGQWP 531

Query: 666 ITQRIYAVGRMNYSI----------------PDRTVAEGLAGFEYKADCWVFRVVAQRIP 709
           +  R Y VGRMNYS+                P + ++EGL G EYKADCW+FRVVAQRIP
Sbjct: 532 LGDRWYGVGRMNYSLSNDYANRPGYKQINVPPKQGLSEGLLGLEYKADCWIFRVVAQRIP 591

Query: 710 TSSTKASTGFFIQLELNGFSKIGSNPLEAIKSSVPGYQNVNLPDSM 755
           T++ KA+T  F QLEL+G +K+GS+P+EA+++++PGYQ +N P ++
Sbjct: 592 TATGKATTSLFFQLELSGLTKLGSDPMEALRTNIPGYQVINKPSNI 637


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,391,309
Number of extensions: 59618
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 671
Effective length of database: 707,092
Effective search space: 474458732
Effective search space used: 474458732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)