BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0666.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093643|ref|YP_001098718.1| hypothetical protein HEAR0365 [...   529   e-152

>gi|134093643|ref|YP_001098718.1| hypothetical protein HEAR0365
           [Herminiimonas arsenicoxydans]
          Length = 345

 Score =  529 bits (1363), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/342 (74%), Positives = 292/342 (85%), Gaps = 1/342 (0%)

Query: 2   SSPGSTPDLRLSELQAWLTTLAATPVLSSTLRPASADASFRRYFRVDTPDGGSAIVMDAP 61
           ++  S+ DLRLSEL+ WL++L A  + ++TLRPAS+DASFRRYFR+D  D  S IVMDAP
Sbjct: 5   TASDSSDDLRLSELKKWLSSLPAPALQTATLRPASSDASFRRYFRIDGADNSSYIVMDAP 64

Query: 62  PPQEDVRPFVKVAGLFGETGVTVPKVLAQDTERGFLLLSDLGSTTYLSQLSADSAHALYM 121
           PP EDVRPF+ VA +FG +GV+VP +LAQD  +GFLLLSDLGSTTYL  L+ D+AHALY+
Sbjct: 65  PPHEDVRPFIHVADVFGASGVSVPDILAQDIPQGFLLLSDLGSTTYLQLLNPDNAHALYI 124

Query: 122 DAIEALVLLQAQSKPAALPEYDRALLLRELELFREWYIGKHLGVTLTAEQNAVLDKTFDA 181
           DAI ALV +Q  S PA LPEYDRALLLREL LF EWYIGKHLG+T+TA Q A L+K FDA
Sbjct: 125 DAINALVQIQLHSTPAVLPEYDRALLLRELMLFPEWYIGKHLGLTMTAAQTATLNKVFDA 184

Query: 182 ILANNLAQPQVYVHRDYHSRNLMVLPKGNPGILDFQDAVYGPITYDLVSLLRDAYIQWDE 241
           +LANNLAQ QVYVHRDYHSRNLMVL KGNPGILDFQDAVYGPITYDL SLLRDAYIQWDE
Sbjct: 185 LLANNLAQAQVYVHRDYHSRNLMVLQKGNPGILDFQDAVYGPITYDLASLLRDAYIQWDE 244

Query: 242 EMVLDWAIRYWEKARRAGLPVTPDIDSFYRDFEWMGLQRHLKVLGIFARLWHRDGKDGYL 301
           E+VLDWAIRYWE+A+RAGLPV PDIDSFYRDFE+MGLQRHLKVLGIFARL+HRDGKD YL
Sbjct: 245 EIVLDWAIRYWERAKRAGLPVNPDIDSFYRDFEYMGLQRHLKVLGIFARLYHRDGKDAYL 304

Query: 302 KDIPLVMEYTLKTARRYVAFTPLVRLIEKLEQEHAPKFGYTF 343
           KDIPLVMEYT K A RY    PLV+L+++LE + AP+ GYTF
Sbjct: 305 KDIPLVMEYTRKAAHRYKELAPLVKLLDELE-DKAPQVGYTF 345


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 687,822
Number of extensions: 28845
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)