BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0665.p
         (238 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferas...   355   2e-99
gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate gu...    82   3e-17
gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase ...    57   1e-09

>gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferase
           [Herminiimonas arsenicoxydans]
          Length = 236

 Score =  355 bits (910), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 166/236 (70%), Positives = 197/236 (83%)

Query: 1   MKAMIFAAGRGQRMRPLTDTCPKPLLKVRGRALIVWQILSLVRAGITEIVINHAHLGQMI 60
           MKAMIFAAGRG+RMRPLTDTCPKPLLKVRGR LIVW IL+LVRAGI +IVINHAHLG MI
Sbjct: 1   MKAMIFAAGRGERMRPLTDTCPKPLLKVRGRPLIVWHILNLVRAGIKDIVINHAHLGGMI 60

Query: 61  EETLGDGSRFGARLFYSPETTALETAGGIAQARHLLGEEPFIAVSGDIWCPHFDYSELLT 120
           EE LG+G +FGA L YS E  ALETAGG+AQARHLLG+EPF+A++ DI+CPHFD+ ++  
Sbjct: 61  EEALGNGEQFGANLIYSAEGEALETAGGVAQARHLLGDEPFLALAADIYCPHFDFKQVRG 120

Query: 121 VLEDEDPWGNPLPQEQRDMAWLYLVKNPPFHPEGDFALNNFAIANEGQPKLTFANIGVYR 180
           VLED D WGNP P +QRD+AWLYLVKNP  H +GDFAL++F+IANEG+P+LTF+ IGVYR
Sbjct: 121 VLEDNDVWGNPYPLDQRDVAWLYLVKNPSHHLQGDFALHSFSIANEGEPRLTFSGIGVYR 180

Query: 181 PQMFDGIAPGTHAKLGPLLRQYADQGRIGGDVYRGQWHNVGTIEQLEALNLPPQGN 236
           P MFD I  G  AKL PLLR+YA +G++GG++YRG W +VGT E+L  LN P  GN
Sbjct: 181 PSMFDSITAGESAKLAPLLREYAARGQVGGELYRGDWTDVGTAERLAELNAPLTGN 236


>gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate
           guanyltransferase [Herminiimonas arsenicoxydans]
          Length = 391

 Score = 81.6 bits (200), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 12/119 (10%)

Query: 1   MKAMIFAAGRGQRMRPLTDTCPKPLLKVRGRALIVWQILSLVRAGITEIVINHAHLGQMI 60
           MKAMI AAG+G R++PLT   PKP++ + G+ ++ + +  LV+ GITEI++N ++L Q I
Sbjct: 1   MKAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGITEIMVNVSYLHQKI 60

Query: 61  EETLGDGSRFGARLFYSPETTALE----------TAGGIAQARHLLG--EEPFIAVSGD 107
           E+  G+G RFGA++ YS E    +          +AGG+ + +   G  +E  + + GD
Sbjct: 61  EDYFGEGQRFGAQIGYSFEGYMTDDGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGD 119


>gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase
           [Herminiimonas arsenicoxydans]
          Length = 301

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 24/239 (10%)

Query: 2   KAMIFAAGRGQRMRPLTDTCPKPLLKVRGRALIVWQILSLVRAGITEI-VINHAHLGQMI 60
           K +I A G G R+ P+T +  K LL V  + +I + + +L+ AGI +I +I+        
Sbjct: 12  KGIILAGGSGTRLYPVTISVSKQLLPVYDKPMIYYPLTTLMLAGIRDILLISTPQDTPRF 71

Query: 61  EETLGDGSRFGARLFYSPETTALETAGGIAQARHLLGEEPFIAVSGD-IWCPHFDYSELL 119
           +E LGDGS++G  L Y+ + T    A      R  +   P   + GD I+  H    +L 
Sbjct: 72  QELLGDGSQWGINLTYAVQPTPDGLAQAFIIGRSFIDNGPSALILGDNIYYGHAFDQQLR 131

Query: 120 TVLEDEDPWGNPLPQEQRDMAWLYLVKNPPFHPEGDFALNNFAIANEGQPKLTFANIGV- 178
              E          +      + Y V++P  +   +F     AI+ E +P +  +N  V 
Sbjct: 132 QASE----------RRSGSTVFAYHVQDPERYGVVEFDKARRAISIEEKPLIPKSNYAVT 181

Query: 179 ----YRPQMFD---GIAPGTHAKL--GPLLRQYADQGRIGGDVY-RGQ-WHNVGTIEQL 226
               Y  Q+ D    I P    +L    + R Y  +G +  ++  RG  W + GT E L
Sbjct: 182 GLYFYDDQVCDIAASIKPSARGELEITDVNRTYLARGELNVELMGRGMAWLDTGTHESL 240


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 507,048
Number of extensions: 21948
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 238
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 159
Effective length of database: 740,042
Effective search space: 117666678
Effective search space used: 117666678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)