BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0664.p
         (448 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093641|ref|YP_001098716.1| proline aminopeptidase P II [He...   675   0.0  

>gi|134093641|ref|YP_001098716.1| proline aminopeptidase P II
           [Herminiimonas arsenicoxydans]
          Length = 444

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/440 (74%), Positives = 375/440 (85%)

Query: 8   FAARRARLLASLQQAGGGVAIIPTAPEVMRNRDADYPYRHDSYFYYLTGFTEPEAVLVLV 67
           +A RRA L+A +Q  GGG+AIIPTAPEVMRNRDADYPYRHDSYFYYL+GFTEPEAV+VL+
Sbjct: 4   YADRRAALMAQMQAKGGGIAIIPTAPEVMRNRDADYPYRHDSYFYYLSGFTEPEAVIVLI 63

Query: 68  AGKENRSILFCRDKNLEREIWDGYRHGPQAAQQLFALDAAHPIEELDKNMPALLSDARAV 127
           AG++N++ILFCR+KN+EREIWDG+R+GP+ A+  F  DAA+PIE +D  +P L+++A A+
Sbjct: 64  AGEKNQAILFCREKNMEREIWDGFRYGPETARSTFGFDAAYPIEAIDTELPRLMANAPAL 123

Query: 128 YYALGQDEKRDAQLQRWLQGVRALARSGVSAPGAVVDVSVLLDDMRLFKDAFEIDVMKRA 187
           +YALG D K DAQ+QRWLQ VRA AR+GV+ P A  DV VLLD+MRL KDA EID+M+R+
Sbjct: 124 FYALGSDSKLDAQVQRWLQNVRAQARAGVTPPTAAYDVHVLLDEMRLTKDAGEIDIMQRS 183

Query: 188 GIISAEAHCRAMRICRPGLREYHLEAELLHEFRRNGSQYPAYGSIVATGANSCVLHYRAG 247
             I+A AH RAMRI RPGLREYHLEAE+LHEFR NGSQ+PAYGSIVATGAN+CVLHYRA 
Sbjct: 184 ADIAAAAHRRAMRIARPGLREYHLEAEILHEFRNNGSQFPAYGSIVATGANACVLHYRAS 243

Query: 248 DAEIKDGDLVLIDAGCELDSYASDITRTFPANGKFSGPQKALYEIVLAAQVAAIAETAPG 307
           DAE+KDGDLVLIDAGCELDSYASDITR FP NGKFSGPQK LYEIVLA+Q AAIAET PG
Sbjct: 244 DAELKDGDLVLIDAGCELDSYASDITRAFPVNGKFSGPQKELYEIVLASQYAAIAETRPG 303

Query: 308 KRFMDGHDAAVRVLAQGMLDTGLLDKSKVGSLDDVIEKGDFRQFYMHRTGHWLGMDVHDV 367
           KRFMDGHDAAV+VLAQGMLDTGLLDK+KVGSL DVIE   + QFYMHRTGHWLGMDVHDV
Sbjct: 304 KRFMDGHDAAVKVLAQGMLDTGLLDKNKVGSLSDVIEHRAYDQFYMHRTGHWLGMDVHDV 363

Query: 368 GDYRDPATADGNKPWRTLQPGMVLTIEPGIYVRPGEGVPEQFWNIGIRIEDDAHVTPSGC 427
           G YRD A     KPWR LQ GMVLT+EPGIYVRP EGVPEQ+WNIGIRIEDDA VT  GC
Sbjct: 364 GAYRDAAANGAEKPWRMLQAGMVLTVEPGIYVRPAEGVPEQYWNIGIRIEDDAVVTADGC 423

Query: 428 ELLTTDVPSKVEDIEALMRQ 447
            +L+   P  V DIEALM+ 
Sbjct: 424 HILSAAAPKTVADIEALMKH 443


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 867,738
Number of extensions: 36770
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 363
Effective length of database: 720,272
Effective search space: 261458736
Effective search space used: 261458736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)