BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0658.p
         (371 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093607|ref|YP_001098682.1| NAD(P) transhydrogenase subunit...   270   1e-73

>gi|134093607|ref|YP_001098682.1| NAD(P) transhydrogenase subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 532

 Score =  270 bits (689), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/379 (45%), Positives = 238/379 (62%), Gaps = 20/379 (5%)

Query: 3   IAIPVESRDGETRVAATPETVKKLVAARHEVMVESGAGIKSSIPDEAYVAVGASI--GHA 60
           I +P ES  GE RVA  PE V+KL+     V VESGAG  ++  D+ Y A GA I  G A
Sbjct: 5   IGVPRESFPGEKRVATVPEVVEKLIKLGFSVSVESGAGDDANFSDDTYRAAGAQIVQGAA 64

Query: 61  EAVYSAEILLKVRAPNAAERARIQAGTVVIGMLNPFDADNTAAM---AAAGLTAFALEAA 117
               +++I+ KVRAP+A E   I+ G+ +IG + P  A N   M   AA  +T  A+++ 
Sbjct: 65  NLWSTSDIVFKVRAPSAEEIGLIREGSTLIGFIWP--AQNPELMQQLAAKRVTVLAMDSL 122

Query: 118 PRT-TRAQSLDVLSSQANIAGYKAVLMAANTYQRFMPMLMTAAGTVKAARMLIMGAGVAG 176
           PRT +RAQ +D L+S A ++GY+AV+ AAN + RF    +TAAG V  A++ I GAGVAG
Sbjct: 123 PRTLSRAQKMDALTSTAGVSGYRAVIEAANAFGRFFNGQITAAGKVPPAKVFIAGAGVAG 182

Query: 177 LQAIATAKRLGAVIEASDVRPAVKEQIESLGAKFLDVPFLTDEEKEIAQGVGGYARPMPP 236
           L AI T+  LGA++ A+D R  V +Q+ SLG +F+ V +  DEE     G GGYA+ M  
Sbjct: 183 LAAIGTSASLGAIVRANDTRAEVADQVVSLGGEFVKVDY--DEE---GSGGGGYAKVMSE 237

Query: 237 DWMKRQAELVHERAKQADIIITTALIPGRKAPVLISEETVKAMKPGSVILDMAVNQGGNC 296
            +   Q E+  ++AK+ DIIITTALIPG+ AP LI+ E V++MKPGSVI+DMA  QGGNC
Sbjct: 238 GFQAAQREMYAQQAKECDIIITTALIPGKPAPKLITAEMVQSMKPGSVIVDMAAEQGGNC 297

Query: 297 PLSEPGKTVIKHGVHIIGEGNLAALVAADASALYARNVLDFL-KLIIDAEGK------LV 349
            L+EPGK V+KHGV I+G  +L + +   AS LY+ N+L    +L  DAEGK      + 
Sbjct: 298 ELTEPGKVVVKHGVTIVGYTDLPSRLPKQASTLYSTNLLRLTEELCKDAEGKKTTDGIIN 357

Query: 350 INQEDDIVAATLLCQGGEI 368
           +N ED+ +    + + G I
Sbjct: 358 VNMEDEAIRGLTVIKEGNI 376


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,054
Number of extensions: 22409
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 288
Effective length of database: 726,862
Effective search space: 209336256
Effective search space used: 209336256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)