BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0652.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093599|ref|YP_001098674.1| hypothetical protein HEAR0319 [...   174   2e-45

>gi|134093599|ref|YP_001098674.1| hypothetical protein HEAR0319
           [Herminiimonas arsenicoxydans]
          Length = 228

 Score =  174 bits (442), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 8/221 (3%)

Query: 14  PSALMRQARKIGPLALIILLHIGFFWALQSGLVKQVSTAVVPKEVIATFIVPEKAPEPAP 73
           P  L +  +K GPL +I++LHIG F+AL+SGLV QV T  +P E+ A+FI  + APEP P
Sbjct: 14  PLFLSQALKKYGPLIVIVVLHIGLFYALRSGLVHQV-TKSLPTEIFASFITEQAAPEPKP 72

Query: 74  PKAEPAPPKQVKIVKKVVAPPKPIPV-TETPAPTAITAPPQPPQPATPAPQVAAEPTPAP 132
              +PA PK V +VKK V  P P PV TE P+P AIT    PPQ +    +  A   P+ 
Sbjct: 73  ---QPAEPKTVPVVKKQVTRPTPRPVVTEAPSPQAITETATPPQESK---EPPAVAAPSA 126

Query: 133 AAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTSGRAEKVEITKSS 192
            A P      ++ SG+ YI  P P YP +  RMG EG V  RV +N  GRAE+VE+ KSS
Sbjct: 127 PAAPAAPATPKMISGVSYINAPRPVYPPLDARMGNEGTVTLRVLINEKGRAERVEVQKSS 186

Query: 193 GYARLDDAARSAVMRAVFKPYIENGRAIMVSTVGSLAFRLN 233
           G  R+DDAAR AVMRA+FKPY+E+GR      +  + F LN
Sbjct: 187 GSLRMDDAARDAVMRALFKPYLEDGRPAPAFAIVPINFTLN 227


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 266,703
Number of extensions: 7943
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)