BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0651.p
         (243 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB prote...   405   e-115
gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB prote...   213   7e-57
gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...    90   1e-19

>gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  405 bits (1042), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/243 (82%), Positives = 217/243 (89%), Gaps = 1/243 (0%)

Query: 1   MEVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWD 60
           MEVSPYGLESLW+QGDFVTKGVA+LL+AMSIASWYVI TKA QL+Q+R+A+ AAGH+FWD
Sbjct: 1   MEVSPYGLESLWSQGDFVTKGVAILLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWD 60

Query: 61  TTSLPDGVATLGQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEAS 120
            TSL +G ATLG  NPFA +A AGVTAM HH AHKGHLHD+LSVSDW+TLSLRQAIDE S
Sbjct: 61  ATSLSEGTATLGSGNPFASIAEAGVTAMRHHEAHKGHLHDELSVSDWITLSLRQAIDETS 120

Query: 121 GKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTAL 180
            KLQTGMAVLASVGSTAPFVGLFGTVWGIYHALV+IGT+GQASIDKVAGPVGEALIMTAL
Sbjct: 121 AKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTAL 180

Query: 181 GLAVAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGARAAGEDGQPNGGKAKLTAV 240
           GLAVAIPATFGYNALVRGNK+ IAK+NKFGFDLHALFVTGAR A +   P    AKL AV
Sbjct: 181 GLAVAIPATFGYNALVRGNKSLIAKMNKFGFDLHALFVTGAR-ANDTNTPGASGAKLVAV 239

Query: 241 GRA 243
           G A
Sbjct: 240 GGA 242


>gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score =  213 bits (542), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 143/219 (65%), Gaps = 5/219 (2%)

Query: 7   GLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFWDTTSLPD 66
           GL   WAQGD V+  VA  LL MSI SWY I++K +   + R+ SAAA   FW   +LPD
Sbjct: 11  GLSHYWAQGDAVSHAVAYALLIMSILSWYYILSKGWSAWRIRR-SAAALENFWQAPTLPD 69

Query: 67  GVATL---GQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEASGKL 123
            +A +     +N +  +A   V A ++ T H   L+      + +T +LRQ I+  S +L
Sbjct: 70  AIAAIRLTDSENVYTPLAAQSVEA-ANITPHANSLNANTDPGELITRTLRQEINRVSSRL 128

Query: 124 QTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTALGLA 183
           + G+ +LASVGSTAPF+GLFGTVWGIYHALV++  +G   IDKVAGPVGEALIMTALGLA
Sbjct: 129 ENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLA 188

Query: 184 VAIPATFGYNALVRGNKTTIAKLNKFGFDLHALFVTGAR 222
           VAIPA   YNA  R N+ T+A+L+ F  DLHA   TG R
Sbjct: 189 VAIPAVLAYNAFTRVNRITLAELDAFAHDLHAYLTTGTR 227


>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 89.7 bits (221), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 11  LWAQGDFVTKGVAVLLLAMSIASWYVIITKAFQLLQFRKASAAAGHQFW----------D 60
           L A    + + V  LL+ +S+ SW  I  K F +   R  +      FW          D
Sbjct: 12  LIANASVLVQLVMALLVGVSVMSWTYIFRKMFAIKNARTQTEEFERAFWSGGDLNALYQD 71

Query: 61  TTSLPDGVATLGQDNPFADVARAGVTAMSHHTAHKGHLHDQLSVS-DWVTLSLRQAIDEA 119
            TS  +   + G       +  AG++  +   A   H   Q SV  D    ++R A    
Sbjct: 72  ATS--NRRKSSGSTGALERIFEAGMSEFNKSRA--SHDPSQASVRLDGARRAMRAAYQRE 127

Query: 120 SGKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTA 179
              L++ +A LASVGS +P+VGLFGTVWGI ++   +    QA++  VA  + EALI TA
Sbjct: 128 MDGLESHLAFLASVGSVSPYVGLFGTVWGIMNSFRGLANVQQATLAAVAPGIAEALIATA 187

Query: 180 LGLAVAIPATFGYN 193
           +GL  AIPA   YN
Sbjct: 188 IGLFAAIPAVVAYN 201


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 483,980
Number of extensions: 19601
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 164
Effective length of database: 740,042
Effective search space: 121366888
Effective search space used: 121366888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)