BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0650.p
         (138 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093597|ref|YP_001098672.1| putative biopolymer transport p...   224   1e-60
gi|134095827|ref|YP_001100902.1| biopolymer transport protein Ex...   135   1e-33
gi|134095582|ref|YP_001100657.1| putative biopolymer transport p...    60   5e-11

>gi|134093597|ref|YP_001098672.1| putative biopolymer transport
           protein ExbD [Herminiimonas arsenicoxydans]
          Length = 137

 Score =  224 bits (571), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 126/138 (91%), Gaps = 1/138 (0%)

Query: 1   MAMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 60
           M+MGSLSD DDDFNPEINTTPLVDVMLVLLIIFI+TIPVMNHAVK+DLP+A++QP++VKP
Sbjct: 1   MSMGSLSD-DDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPRAANQPNEVKP 59

Query: 61  ESINLSIDAAGNVFWNEEKIDSSELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSA 120
           E+INLSIDAAG V+WN E +D S+L AR+A AA+  PQPELHLRAERTT YEKVAQVM+A
Sbjct: 60  ETINLSIDAAGKVYWNNEILDESQLAARVADAAKVTPQPELHLRAERTTPYEKVAQVMAA 119

Query: 121 AQSGGLAKIGFVTDPEKK 138
           AQSGGL+K+GFVT+  KK
Sbjct: 120 AQSGGLSKMGFVTEAPKK 137


>gi|134095827|ref|YP_001100902.1| biopolymer transport protein ExbD
           [Herminiimonas arsenicoxydans]
          Length = 127

 Score =  135 bits (339), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 91/119 (76%)

Query: 16  EINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKPESINLSIDAAGNVFW 75
           +IN TP+VDVMLVLL+IFIIT P+  HA+K+DLP A S P   +P +I+LSI+  G +FW
Sbjct: 3   DINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTEPSTISLSINGEGAIFW 62

Query: 76  NEEKIDSSELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSAAQSGGLAKIGFVTD 134
           N + +   EL +R A AA++QPQP+L LRA+R T+YE +AQVM+AAQ  GL K+GFVTD
Sbjct: 63  NNDAVTQDELTSRFAIAAKQQPQPQLQLRADRGTRYEVIAQVMAAAQGNGLTKLGFVTD 121


>gi|134095582|ref|YP_001100657.1| putative biopolymer transport
           protein ExbD/TolR; putative TOLR-related transport
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 146

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 11/131 (8%)

Query: 13  FNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKAS-SQPDQVKPESINLSIDAAG 71
           F  EIN  P +DVM+VLL+IF++T P++N + +I+LP A+ S     +   I+L  DA+ 
Sbjct: 16  FKSEINVVPYIDVMMVLLVIFMVTAPMVNPS-EIELPNAAKSTLPPTEYIRIDLKADASA 74

Query: 72  NVFWNEEKIDS---------SELNARIAAAAQKQPQPELHLRAERTTQYEKVAQVMSAAQ 122
            V    +K  +          EL  ++       P   + + A++  +Y++V Q +S A+
Sbjct: 75  TVSVQGKKGGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADKNIKYDEVIQAISEAK 134

Query: 123 SGGLAKIGFVT 133
             G++++G  T
Sbjct: 135 KLGISRVGLAT 145


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,284
Number of extensions: 8338
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 65
Effective length of database: 759,812
Effective search space: 49387780
Effective search space used: 49387780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)