BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0649.p
         (159 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093596|ref|YP_001098671.1| bacterioferritin, an iron stora...   276   3e-76

>gi|134093596|ref|YP_001098671.1| bacterioferritin, an iron storage
           homoprotein [Herminiimonas arsenicoxydans]
          Length = 157

 Score =  276 bits (707), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 140/155 (90%)

Query: 1   MKGDPAVIKLLNAQLTNELTAINQYFLHARMYKHWGLDKIGAKEYAESIGEMKHADKLID 60
           MKGD  +IKLLNAQLTNEL+AINQYFLHARMYKHWG +KI  KEY ESIGEMKHADKLID
Sbjct: 1   MKGDSNIIKLLNAQLTNELSAINQYFLHARMYKHWGFEKIAKKEYEESIGEMKHADKLID 60

Query: 61  RILMLDGLPNLQALHKLMIGENTQEMLQCDLKLEQGAQKTVKEGIATCEQHGDYVSRELF 120
           RILMLDGLPN+Q LHKLMIGENTQEML CDLKLE  A KTVKEGIA CE  GDYVSRELF
Sbjct: 61  RILMLDGLPNVQLLHKLMIGENTQEMLACDLKLETMAHKTVKEGIAACEASGDYVSRELF 120

Query: 121 QMILDDTEEHIDWLETQLDLIDKVGIQNYLQSQMS 155
           Q ILDDTEEHIDWLETQLDLI+KVGIQNYLQSQM+
Sbjct: 121 QYILDDTEEHIDWLETQLDLIEKVGIQNYLQSQMT 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 293,587
Number of extensions: 10882
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 84
Effective length of database: 753,222
Effective search space: 63270648
Effective search space used: 63270648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)