BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0647.p
         (455 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093592|ref|YP_001098667.1| adenylosuccinate lyase [Hermini...   837   0.0  

>gi|134093592|ref|YP_001098667.1| adenylosuccinate lyase
           [Herminiimonas arsenicoxydans]
          Length = 477

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/455 (87%), Positives = 427/455 (93%)

Query: 1   MSLSALSALSPLDGRYASKTDKLRPLLSEAGFMHHRVKVEIAWLQALSEAGFAEIKPFSA 60
           M LSALSALSPLDGRYA KTDKLRP+LSEAGFMHHRVKVEIAWLQALS AGFAEIKPFSA
Sbjct: 23  MPLSALSALSPLDGRYAVKTDKLRPILSEAGFMHHRVKVEIAWLQALSTAGFAEIKPFSA 82

Query: 61  SARALLEQLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120
           SA ALL +L  DFTE DA RIK+IEAVTNHDVKAVEYWLKE+VKDVPELVAA+EFIHFAC
Sbjct: 83  SANALLNKLTTDFTEVDAQRIKDIEAVTNHDVKAVEYWLKEQVKDVPELVAATEFIHFAC 142

Query: 121 TSEDINNTSHGMMLKAARDTVLLPSLQAVIAKLTELAHEHAAVPMLSRTHGQPASPTTLG 180
           TSEDINNTSHGMMLKAARDTV+LP+LQA++AKLT+LAH++AA+PM+SRTHGQPASPTTLG
Sbjct: 143 TSEDINNTSHGMMLKAARDTVMLPALQALVAKLTQLAHDNAALPMMSRTHGQPASPTTLG 202

Query: 181 KEVANVVARLQRAAKRIAAVEILGKMNGAVGNYNAHLSAYPQTDWAAFSKQVVEQRLGLV 240
           KE+ANVVARL+RA  RIA V+ILGKMNGAVGN+NAHLSAYP TDW AFSK V+E RLGL 
Sbjct: 203 KEMANVVARLKRAIDRIADVQILGKMNGAVGNFNAHLSAYPHTDWQAFSKDVIENRLGLT 262

Query: 241 FNPYTIQIEPHDYMAELFDAVARTNTILLDLNRDIWGYISLGYFKQRTKAGEIGSSTMPH 300
           FNPYTIQIEPHDYMAELFDA+ARTNTILLDLNRDIWGYISLGYFKQ TKAGEIGSSTMPH
Sbjct: 263 FNPYTIQIEPHDYMAELFDAIARTNTILLDLNRDIWGYISLGYFKQSTKAGEIGSSTMPH 322

Query: 301 KVNPIDFENSEGNLGMANAVLKHLSEKLPVSRWQRDLTDSTVLRNIGVGFGYTLLAYDSC 360
           KVNPIDFENSEGNLGMANAVLKH++EKLP+SRWQRDLTDSTVLRNIGVGFGY LLAYDSC
Sbjct: 323 KVNPIDFENSEGNLGMANAVLKHMAEKLPISRWQRDLTDSTVLRNIGVGFGYALLAYDSC 382

Query: 361 LRGLNKLEVNPQRLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGISKDALR 420
           LRGLNKLEVNP R+A DLD TWEVLAEPVQTVMRRYGIENPYEQLK+LTRGKGISK+AL+
Sbjct: 383 LRGLNKLEVNPVRIAQDLDETWEVLAEPVQTVMRRYGIENPYEQLKDLTRGKGISKEALQ 442

Query: 421 DFINGLAIPQEAKDHLLAMTPANYIGTAVELAKQI 455
           +FI  LAIPQEAKD LL MTPANYIG A +LA++I
Sbjct: 443 EFIVTLAIPQEAKDLLLTMTPANYIGYASKLAREI 477


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 831,818
Number of extensions: 33031
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 370
Effective length of database: 720,272
Effective search space: 266500640
Effective search space used: 266500640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)