BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0644.p
         (190 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093589|ref|YP_001098664.1| putative signal peptide [Hermin...   281   1e-77

>gi|134093589|ref|YP_001098664.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 189

 Score =  281 bits (719), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 158/191 (82%), Gaps = 3/191 (1%)

Query: 1   MKLNHLLLALVAAGAAVSANAADTYSIDPSHTYPSFEADHMGVSIWRGKFDKTSGTVTLD 60
           MK    L+ L+AA A  ++  A TY+IDPSHTYPSFEADHMG+S+WRGKFDKTSG+V LD
Sbjct: 1   MKSKIALICLLAASA--TSAFAQTYTIDPSHTYPSFEADHMGISVWRGKFDKTSGSVVLD 58

Query: 61  RAAKTGTVDIVVDTASIDFGMAKMNDHAKSADMFDVAKYPTAEYKG-TIKFNGDKPASVE 119
           RAAKTG++D+VVD  SIDFG AKMN+HAKS D+F+V K+PTA YK   IKF+GDKP SV+
Sbjct: 59  RAAKTGSLDLVVDATSIDFGHAKMNEHAKSKDLFNVEKFPTATYKSKAIKFDGDKPVSVD 118

Query: 120 GNLTLHGVTKPVTLTLNKFNCIMNPMLKREVCGGDASATFNRADFGIDYGVKYGFSMETK 179
           G LTL GVTKPVTL +NKF CI +PMLKREVCG DASATFNR+DFG+ YG+ YGFS E K
Sbjct: 119 GELTLLGVTKPVTLAINKFKCIQHPMLKREVCGADASATFNRSDFGLTYGINYGFSPEVK 178

Query: 180 LAIQVEAVKTN 190
           LAIQVEAVK +
Sbjct: 179 LAIQVEAVKAD 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 319,560
Number of extensions: 12306
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 113
Effective length of database: 746,632
Effective search space: 84369416
Effective search space used: 84369416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)