BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0643.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095766|ref|YP_001100841.1| pyridoxine 5'-phosphate oxidase...   298   2e-82

>gi|134095766|ref|YP_001100841.1| pyridoxine 5'-phosphate oxidase
           [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  298 bits (762), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 167/211 (79%)

Query: 1   MSLADLRKDYSRASLSELDTAADPIDQFAIWFDEASRAQIPEPNAMSVATVGADGRPSSR 60
           MS+AD+R DY++A LSE DTAADP+ QFA WFDEA  A++PEPNAM V+TVG +GRPSSR
Sbjct: 1   MSIADIRTDYAQADLSETDTAADPVTQFAKWFDEALHAEVPEPNAMGVSTVGENGRPSSR 60

Query: 61  IILIKQFDQQGFTWFTNYDSRKGLDVIHNPYVALLFHWVELERQVRVEGKIERVSKEESD 120
           I+LIK FDQ+GFTWFTNYDSRKG ++  NPY ALLFHW+ LER+VR+EG++ERVS EES+
Sbjct: 61  IVLIKDFDQRGFTWFTNYDSRKGRELEKNPYAALLFHWIALEREVRIEGRVERVSAEESE 120

Query: 121 AYFYSRPLASQLGAIASQQSRTVASRETLEQQYETTKQQFGEHPTRPEHWGGYRVIPDRI 180
            YF SRP+ S+L AIAS QS  +A R  LE QY   + Q G+   RP HWGGYR+ P+ +
Sbjct: 121 QYFQSRPVKSRLSAIASAQSAPIADRAALEAQYAKVEAQHGDSTPRPPHWGGYRLQPEYV 180

Query: 181 EFWQGRPSRMHDRVLYTRSPDGQWQRQRLQP 211
           EFWQGR SR+HDR+ YT   DGQW RQRLQP
Sbjct: 181 EFWQGRRSRLHDRIAYTLQKDGQWTRQRLQP 211


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 401,882
Number of extensions: 15609
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)