BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0639.p
         (243 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093310|ref|YP_001098385.1| outer membrane protein W [Hermi...   281   1e-77
gi|134095438|ref|YP_001100513.1| putative Outer membrane protein...    67   1e-12

>gi|134093310|ref|YP_001098385.1| outer membrane protein W
           [Herminiimonas arsenicoxydans]
          Length = 249

 Score =  281 bits (720), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/246 (60%), Positives = 182/246 (73%), Gaps = 10/246 (4%)

Query: 5   FSFLPKLAAL---SVMAAFAAPAMAQSAGSNVVNVGWFHLAPQDSSDPL--QTPA-GPLP 58
           F  LP+LAA+   S +AAF+ PA AQSAG N+VNVGWFHL   DSS+ L  ++PA GP+ 
Sbjct: 7   FRVLPQLAAVTAVSALAAFSLPAAAQSAGDNIVNVGWFHLKTYDSSETLIRRSPAPGPIA 66

Query: 59  GSGASVGTADTLGLAFTHFFTDNFALTTDLGIPPTFHLNGTGSLSGVGEIGKAKQWSPAV 118
           GS A+VG ADTLGLAFTHF TDNFALT DLGIPP F L+G GSL+ +G+IG A+QWSPAV
Sbjct: 67  GSSATVGDADTLGLAFTHFVTDNFALTADLGIPPKFKLDGAGSLASLGQIGTARQWSPAV 126

Query: 119 VAKWFFGDANSQFRPFVGAGVSYVWYDSIQLSNTFQQAISMRYTGNRSAASPSTAALSSS 178
           +AKW+FGD NSQ RPFVG GV+ VWY  ++LS++ Q A++    G    A   TA LSSS
Sbjct: 127 IAKWYFGDRNSQIRPFVGLGVTRVWYSDVKLSSSLQAAVTPPAFGGPGTA---TANLSSS 183

Query: 179 WAPVVSLGANYNFDKNWSLGFSVSYIPLKTDADITTTLPTGTQV-HSTTSLKINPIVTFL 237
           W+PV +LG  YN DK WS+GFS+SYIPL TDA+I      G  +   TT+L ++P+VTFL
Sbjct: 184 WSPVANLGLTYNIDKKWSIGFSISYIPLDTDAEIIGRNAAGNVISRHTTNLTLDPLVTFL 243

Query: 238 SVGYKF 243
           SVGYKF
Sbjct: 244 SVGYKF 249


>gi|134095438|ref|YP_001100513.1| putative Outer membrane protein W
           [Herminiimonas arsenicoxydans]
          Length = 206

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 37/233 (15%)

Query: 13  ALSVMAAFAAPAMAQSA--GSNVVNVGWFHLAPQDSSDPLQTPAGPLPGSGASVGTADTL 70
           AL  + A ++ A AQ    G  +V V   HL P + SDP+    G    +  ++ +    
Sbjct: 9   ALCSLTALSSQAFAQQVQEGPWLVRVRAVHLDPANKSDPV---GGTGAANRLTIDSKTIP 65

Query: 71  GLAFTHFFTDNFALTTDLGIPPTFHLNGTGSLSGVGEIGKAKQWSPAVVAKWFFGDANSQ 130
            L  ++FFT N+A    L  P    ++  G      EIG  K   P +  ++ F    + 
Sbjct: 66  ELDISYFFTPNWAAELVLTYPQKQRVSLDGK-----EIGTFKHLPPTLTMQYHFTPEKT- 119

Query: 131 FRPFVGAGVSYVWYDSIQLSNTFQQAISMRYTGNRSAASPSTAALSSSWAPVVSLGANYN 190
             P+VGAG++Y    S++L N   Q                    SSS    +  G ++ 
Sbjct: 120 ISPYVGAGINYTRISSVKLLNGAAQL------------------ESSSVGLALQAGVDFK 161

Query: 191 FDKNWSLGFSVSYIPLKTDADITTTLPTGTQVHSTTSLKINPIVTFLSVGYKF 243
            DK WSL   V  + +++D          T     +++KI+P +  + VGY+F
Sbjct: 162 IDKKWSLNLDVKKVQIRSDVR--------TAAGQLSAVKIDPWLIGVGVGYRF 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 437,163
Number of extensions: 18161
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 164
Effective length of database: 740,042
Effective search space: 121366888
Effective search space used: 121366888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)