BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0638.p
         (351 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC fa...   441   e-125

>gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC
           family protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  441 bits (1134), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/338 (68%), Positives = 259/338 (76%), Gaps = 5/338 (1%)

Query: 12  IDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSP 71
           +D  AI  AAR+LE+G LVAFPTETVYGLG DAENP A+A IY AKGRP+NHPVIVH++P
Sbjct: 5   LDLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLAP 64

Query: 72  EADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGLRCPSHPVAQA 131
           EADI YWA  V  EAR+LIA+FWPGPLTLILKRA HIPD VAGGQDS+GLRCPSHPVAQA
Sbjct: 65  EADIAYWAKDVSPEARQLIAAFWPGPLTLILKRANHIPDTVAGGQDSIGLRCPSHPVAQA 124

Query: 132 LLREFRGGKGGIAAPSANKFGHVSPTTAAHVREEFGSDENSPLDDVLDGGQSEVGIESTI 191
           LLR F+ GKGGIAAPSANKFGHVSPTTA HVR+EF  D N  L  VLDGGQSEVGIESTI
Sbjct: 125 LLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIESTI 184

Query: 192 VDLSRIDSHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQVS 251
           VD+SR  +   VLLRPG ISA +I AVLGV    PDA APRASGTL+AHYAPHTPVV + 
Sbjct: 185 VDMSRGRA---VLLRPGHISAAQIGAVLGVAPLLPDAAAPRASGTLEAHYAPHTPVVLLE 241

Query: 252 LEELPTVLPKLAEIGQKVALIRRQFQGSVPACVEVTRAMPVSADAYAHDLYAALREMDHA 311
            E++   L +L   G++VAL+   F  +VPA   +   +P     YAHDLYAALR MD A
Sbjct: 242 REQMHEALQQLHAHGKRVALMHHSFTATVPAAASIF--LPAQPALYAHDLYAALRAMDDA 299

Query: 312 AADLIVVESLPASADWQGVNDRLRRAAFDSQGLLARLF 349
            AD+I+VES P    W GVNDRLRRAA DS G+L  L 
Sbjct: 300 HADVIMVESPPGDEAWNGVNDRLRRAAHDSSGILLTLL 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 717,180
Number of extensions: 31129
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 268
Effective length of database: 726,862
Effective search space: 194799016
Effective search space used: 194799016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)