BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0637.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095774|ref|YP_001100849.1| phosphoribosylaminoimidazole ca...   583   e-168
gi|134094612|ref|YP_001099687.1| phosphoribosylglycinamide formy...    93   2e-20

>gi|134095774|ref|YP_001100849.1| phosphoribosylaminoimidazole
           carboxylase CO(2)-fixing subunit [Herminiimonas
           arsenicoxydans]
          Length = 397

 Score =  583 bits (1504), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/397 (72%), Positives = 315/397 (79%), Gaps = 1/397 (0%)

Query: 5   SASTLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLI 64
           S + L P  PS    TWLGVMGGGQLGRMFAHAAQ MGFKVAVLE   DCPAG  AD+L 
Sbjct: 2   SKNELSPLNPSAA-GTWLGVMGGGQLGRMFAHAAQQMGFKVAVLEPAFDCPAGHAADQLH 60

Query: 65  NAAYDDGAALAELGALCAAVTTEFENVSAKSLATLALQTFVAPAASGVSIAQDRTAEKAF 124
           +A Y D  AL +L + CAAVTTEFENVSAKSLA LA  TFVAP+AS VSIAQDR AEK F
Sbjct: 61  SADYTDVEALTKLASQCAAVTTEFENVSAKSLAFLAESTFVAPSASCVSIAQDRMAEKRF 120

Query: 125 FTECGSQSGVLPAPHLVINSEADIDGLDANLLPGILKTARMGYDGKGQVRVRSVEEVRNA 184
           F EC   SGV PA H  INS ADID +  +LLPGILKT RMGYDGKGQVRV++  E+  A
Sbjct: 121 FIECAITSGVFPASHKEINSAADIDAVPDDLLPGILKTVRMGYDGKGQVRVKTRAELHAA 180

Query: 185 FAAMKGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGPNIKA 244
           +  M GV CVLEKMLPLAYE+SVL ARG DG+AVVYPIAENVHRDGILFTTTVPGPNI  
Sbjct: 181 YGGMDGVACVLEKMLPLAYEISVLAARGADGKAVVYPIAENVHRDGILFTTTVPGPNIGK 240

Query: 245 DAAERAQQAALQIIGAMQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACVTSQF 304
            +AE+AQ A L +I  M YVGVLCIEFFVL DG+LVVNEMAPRPHNSGHYTIDACVTSQF
Sbjct: 241 KSAEKAQAATLAVIEQMGYVGVLCIEFFVLTDGSLVVNEMAPRPHNSGHYTIDACVTSQF 300

Query: 305 EQQVRAMARLPLGDTRQHSPTVMLNILGDVWYEDDTDAQREPAWDQVLALPGAHLHLYGK 364
            QQ RAMARLPLGD RQHS   MLNILGD+W+  D+D  REPAWDQVLALPGA+LHLYGK
Sbjct: 301 AQQARAMARLPLGDVRQHSAAAMLNILGDIWFAGDSDEAREPAWDQVLALPGANLHLYGK 360

Query: 365 AEARRGRKMGHVTFTGATLADAQRQLAAACAILGIAL 401
             ARR RKMGH+TF  AT+A+AQ  L  ACAILGI +
Sbjct: 361 DTARRARKMGHITFVAATVAEAQANLRQACAILGITV 397


>gi|134094612|ref|YP_001099687.1| phosphoribosylglycinamide
           formyltransferase 2 [Herminiimonas arsenicoxydans]
          Length = 407

 Score = 92.8 bits (229), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 177/402 (44%), Gaps = 56/402 (13%)

Query: 3   QQSASTLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADR 62
            +S +  R   P T  AT + ++G G+LG+    + Q +G +V  ++  A+ P  QVA R
Sbjct: 2   NKSNTISRIGTPLTHNATKVMLLGSGELGKEVIISLQRLGIEVIAVDRYANAPGHQVAHR 61

Query: 63  LINAAYDDGAALA-------------ELGALCAAVTTEFENVSAKSLATLALQTFVAPAA 109
                  DG ALA             E+ A+  A   E EN         A    V P A
Sbjct: 62  AYVIDMTDGVALAALINQEKPDLVVPEIEAIATATLLEMEN---------AGNVRVIPTA 112

Query: 110 SGVSIAQDRTAEKAFFTECGSQSGVLPAPHLVINSEADIDGLDANL-LPGILKTARMGYD 168
               +  DR   +    E   + GV  +P+   +S  ++    A++  P ++K   M   
Sbjct: 113 RAAWLTMDREGIRRLAAE---ELGVATSPYRFADSLKELKAGCADIGYPCVVKPV-MSSS 168

Query: 169 GKGQVRVRSVEEVRNAF--AAMKGVT----CVLEKMLPLAYEVSVLVAR--GHDGQAVVY 220
           GKGQ ++ S +++  A+  AA  G       ++E  +   YE+++L  R  G DG    +
Sbjct: 169 GKGQSKLNSADDIEAAWNCAAAGGRVDTGRVIVEGFIDFDYEITLLTVRAIGADGATHTH 228

Query: 221 ---PIAENVHRDGILFTTTVPGPNIKADAAERAQQAALQIIGAMQYVGVLCIEFFVLEDG 277
              PI  ++  +G    +  P   +   A ++A   A ++   +  +G+  +E FV  D 
Sbjct: 229 FCEPIG-HLQVNGDYVESWQP-QAMHPGALQKAHDIAKKVTDNLGGLGLFGVELFVKHD- 285

Query: 278 ALVVNEMAPRPHNSGHYTIDACVTSQFEQQVRAMARLPLGDTRQHSPTVMLNILGD---- 333
            +  +E++PRPH++G  T+ +   S+FE   +A+  LP+ +    +P     I G     
Sbjct: 286 MVWFSEVSPRPHDTGMVTMASQEQSEFELHAKAILGLPV-NVAMKTPAASAVIYGQHDGE 344

Query: 334 -VWYEDDTDAQREPAWDQVLALPGAHLHLYGKAEARRGRKMG 374
            V +E   DA R         +PG  + L+GK E+   R+MG
Sbjct: 345 VVAFEGVADALR---------VPGTDVRLFGKPESFARRRMG 377


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 676,023
Number of extensions: 25394
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)