BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0631.p
         (306 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095779|ref|YP_001100854.1| branched-chain amino acid amino...   575   e-165
gi|134096156|ref|YP_001101231.1| D-alanine aminotransferase [Her...    77   9e-16

>gi|134095779|ref|YP_001100854.1| branched-chain amino acid
           aminotransferase [Herminiimonas arsenicoxydans]
          Length = 306

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 267/306 (87%), Positives = 291/306 (95%)

Query: 1   MSMADRDGKIWKDGALIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPEGTAIFRLKEHTQ 60
           MSMADRDGKIWKDG LIDWRDATVHVLTH+LHYGM VFEGVRAY+TP+GTAIFRL+EHT+
Sbjct: 1   MSMADRDGKIWKDGRLIDWRDATVHVLTHSLHYGMAVFEGVRAYRTPQGTAIFRLREHTE 60

Query: 61  RLFNSAKIFQMVVPFDQATLAEAQRQVVRENNLESCYIRPLIWIGSEKLGVSAKGNQIHV 120
           RLFNSAKIFQM +PFDQ T+ +AQ QVVREN LESCY+RPL+WIG EKLGVSA+GN IH+
Sbjct: 61  RLFNSAKIFQMTIPFDQETVMQAQLQVVRENRLESCYLRPLVWIGDEKLGVSAQGNTIHI 120

Query: 121 AIAAWPWGAYLGEDGINKGIRVKTSSFTRHHVNVSLVRAKACGYYINSILANQEALADGY 180
           AIAAWPWGAYLGEDGINKGIRVKTSSF+RHHVNVSLVRAKA GYYINSILANQEALADGY
Sbjct: 121 AIAAWPWGAYLGEDGINKGIRVKTSSFSRHHVNVSLVRAKASGYYINSILANQEALADGY 180

Query: 181 DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR 240
           DEALLLDT+GYVSEGSGENVFIVK GKIYTPDLASCLDGITRD+VLTMARDLGI+V+EKR
Sbjct: 181 DEALLLDTDGYVSEGSGENVFIVKKGKIYTPDLASCLDGITRDSVLTMARDLGIDVVEKR 240

Query: 241 ITRDEMYCADEAFFTGTAAEVTPIRELDRRVIGNGARGPITEKLQSLFFDVVSGRAPQYR 300
           ITRDE+YCADEAFFTGTAAE+TPIRELD R IG+G RGPITEKLQ+LFFDVV+G+APQY 
Sbjct: 241 ITRDEVYCADEAFFTGTAAEITPIRELDNRTIGDGRRGPITEKLQALFFDVVAGKAPQYS 300

Query: 301 HWLTLV 306
           HWLT+V
Sbjct: 301 HWLTIV 306


>gi|134096156|ref|YP_001101231.1| D-alanine aminotransferase
           [Herminiimonas arsenicoxydans]
          Length = 271

 Score = 77.4 bits (189), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 114/271 (42%), Gaps = 14/271 (5%)

Query: 21  DATVHVLTHTLHYGMGVFEGVRAYKTPEGTAIFRLKEHTQRLFNSAKIFQMVVPFDQATL 80
           +A + VL     +G G++E +  Y+      +FR  +H QRLF       +V P+D    
Sbjct: 6   EAKIPVLDRGFIFGDGIYEVIPVYQR----KLFRSAQHLQRLFRGLAAVSIVNPYDAQGW 61

Query: 81  AEAQRQVVRENNLES--CYIRPLIWIGSEKLGVSAKGNQIHVAIAAWPWGAYLGEDGINK 138
                +VVR +  E    Y++    +               V I + P      E   N 
Sbjct: 62  LALIEEVVRRHPAEDQLVYMQVTRGVAPRMHAFPPTKPAPTVFIMSNPLLPLSDEARANG 121

Query: 139 GIRVKTSSFTRHHVNVSLVRAKACGYYINSILANQEALADGYDEALLLDTEGYVSEGSGE 198
              V        H  +  +        + ++LA Q A+     E++    +G+++EGS  
Sbjct: 122 VACVSMEDQRWLHCEIKSIS------LLGNVLAAQNAVVHEASESIQF-RDGFLTEGSAS 174

Query: 199 NVFIVKNGKIYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDEMYCADEAFFTGT 257
           NV+IVKNG +  P   +  L+GI    +  +     I    +RI R E++ ADE   +  
Sbjct: 175 NVWIVKNGGVIGPPRDNLILEGIRYGLIEELCAAGRIPFETRRIARAEVFAADEVLLSSA 234

Query: 258 AAEVTPIRELDRRVIGNGARGPITEKLQSLF 288
           + EV  +  +D + I NG  GPI +KL + +
Sbjct: 235 SKEVLAVATIDGQPIANGKPGPIYKKLYAAY 265


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,970
Number of extensions: 24440
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 225
Effective length of database: 733,452
Effective search space: 165026700
Effective search space used: 165026700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)