BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0629.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095781|ref|YP_001100856.1| hypothetical protein HEAR2613 [...   175   8e-46

>gi|134095781|ref|YP_001100856.1| hypothetical protein HEAR2613
           [Herminiimonas arsenicoxydans]
          Length = 143

 Score =  175 bits (444), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 107/142 (75%)

Query: 1   MPRNKLIHGSPDEIEAAYYDALARADLEALMDLWADDEEVVCIHPGAQRLVGHAEIRAVW 60
           MP+ +   G+ D+IE A YDA+ RADLEALM+LWADDEE+VCIHP   RL+G+A IR  W
Sbjct: 1   MPKIRKQFGTADDIENALYDAIGRADLEALMELWADDEEIVCIHPDGTRLIGYAAIRTSW 60

Query: 61  EDILSNGGLHIRPRQLHVTQNMMTAVHSVVEEIEHGSQDQPEVHVIATNVYLKTTLGWRM 120
           E+I + GG+HIRP QLH + N+M+AVH+++E +      Q +VH++ATNVY+KT LGWR+
Sbjct: 61  EEIFTRGGVHIRPLQLHTSHNVMSAVHNLIEAVFTIEGAQRDVHILATNVYVKTPLGWRL 120

Query: 121 VMHHASVAPGAAPAEAVISGAM 142
           V+HHAS APG A +E V +  +
Sbjct: 121 VLHHASTAPGKAKSELVANNVL 142


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 232,325
Number of extensions: 7329
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)