BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0624.p
         (168 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095787|ref|YP_001100862.1| fimbrial protein [Herminiimonas...    73   6e-15

>gi|134095787|ref|YP_001100862.1| fimbrial protein [Herminiimonas
           arsenicoxydans]
          Length = 156

 Score = 73.2 bits (178), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 12/138 (8%)

Query: 1   MKAV-VSRRAQQGFTLLELMVTLAVIGILAMLGASQYQDYIVRARVSEGFNLAEPYKLAV 59
           MK++ + ++AQ GFTL+ELM+ +A+IGILA +   QYQDY+ RA++++     E  K A+
Sbjct: 1   MKSMKIMKKAQAGFTLIELMIVVAIIGILAAVAIPQYQDYVTRAKLAKVNVAVESVKTAI 60

Query: 60  TEQISSNNGVFTVA-----QLGLP-AFTPTDNVSKIEVSPMEKRGVGGVI-TITYGPRVG 112
                 NNGV  +       LGL  A T T+ VS I+V+       G ++ TIT      
Sbjct: 61  ALYAQENNGVADITANGWDSLGLAGAPTATEVVSGIDVTA----ATGAIVATITGVGSPF 116

Query: 113 DGGSLTLTPTIASGTIQW 130
           +G ++T TPT+ +  + W
Sbjct: 117 NGTTVTYTPTVGNSAVTW 134


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 325,101
Number of extensions: 12967
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 93
Effective length of database: 753,222
Effective search space: 70049646
Effective search space used: 70049646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)