BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0623.p (245 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096089|ref|YP_001101164.1| hypothetical protein HEAR2930 [... 236 1e-63 gi|134095855|ref|YP_001100930.1| TerC family protein [Herminiimo... 196 1e-51 gi|134093496|ref|YP_001098571.1| TerC family protein [Herminiimo... 139 1e-34 >gi|134096089|ref|YP_001101164.1| hypothetical protein HEAR2930 [Herminiimonas arsenicoxydans] Length = 237 Score = 236 bits (601), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/230 (53%), Positives = 169/230 (73%), Gaps = 6/230 (2%) Query: 9 WVAVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIALIAFAVTML 68 W A+ IILI+I+L GDNA+VIALA ++LP K + ++WG+ AI +RI L FA+ +L Sbjct: 10 WAALGNIILINIVLSGDNAVVIALAAKSLPPKQKKLAVIWGSAAAIILRIVLTIFALQLL 69 Query: 69 QLPYLKLVGGILLLWIGIKLLNEEDEHTDINGSDRLWGAVKTVIVADLVMSLDNVIAIAS 128 LPYLKL+GG+LL +IG++LL E+ +I GS LWGA+KT+++ADLVMSLDNV+ +A+ Sbjct: 70 TLPYLKLIGGVLLFYIGVQLLAEDGGEENIEGSSNLWGAIKTILIADLVMSLDNVLGVAA 129 Query: 129 AAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAALLGYIAGGMIFS 188 AA+ G L++ G+ +S+P+IV+GSTLVLKLMEKFP+I+TLGAALLGY+AG M+FS Sbjct: 130 AADGHVG-----LLIIGLAISVPLIVFGSTLVLKLMEKFPIIITLGAALLGYLAGEMLFS 184 Query: 189 DAAMQAWLRDVIAETEFILPGAAVHLSLPGLVGALGVVLTGLTLKRRKAE 238 D A+ W+ + E L G HLS+PGLV A+GVV+ G L +R + Sbjct: 185 DTAVVPWIEANVPHHELNLFG-NTHLSIPGLVLAIGVVVVGTYLGKRHHK 233 >gi|134095855|ref|YP_001100930.1| TerC family protein [Herminiimonas arsenicoxydans] Length = 230 Score = 196 bits (498), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/228 (47%), Positives = 159/228 (69%), Gaps = 16/228 (7%) Query: 9 WVAVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIALIAFAVTML 68 WVA+ QI++I+ILL GDNA++IALACR+LP K + + GTV + + AL AFA ++ Sbjct: 11 WVALFQIVIINILLSGDNAVIIALACRSLPPKEQRNAFLIGTVAIVILMTALTAFASYLM 70 Query: 69 QLPYLKLVGGILLLWIGIKLLNEEDEHTDINGSDRLWGAVKTVIVADLVMSLDNVIAIAS 128 +PY+++ G ILLLWIGIKLL E+E+ +++ SD WGAVKT+++AD+VMSLDNV+ +A Sbjct: 71 TIPYVEVAGAILLLWIGIKLLLPEEENENVSASDNFWGAVKTIVIADIVMSLDNVLGMAG 130 Query: 129 AAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAALLGYIAGGMIFS 188 AA G LL V G+V++IP+I++GS ++++LME+FP+IVTLGA LLGY+AG M Sbjct: 131 AAN---GHMGLLFV--GMVITIPLILFGSAMLMRLMERFPIIVTLGAGLLGYVAGEMAVE 185 Query: 189 DAAMQAWLRDVIAETEFILPGAAVHLSLPGLVGALGVVLTGLTLKRRK 236 D A L+ +IA ++ ++LP ++G L VV G L R+ Sbjct: 186 DPA----LKGLIASAHYL------EIALP-ILGILIVVGMGKLLSARQ 222 >gi|134093496|ref|YP_001098571.1| TerC family protein [Herminiimonas arsenicoxydans] Length = 236 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 154/249 (61%), Gaps = 22/249 (8%) Query: 1 MELLTNLNWVAVAQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIAL 60 M++ + + A+ II+ID++L GDNAIVIAL R LP L+ I+ GT+GA+A+R+ + Sbjct: 1 MDMFSADFFSALMAIIVIDLVLAGDNAIVIALVARKLPQHLQRITIIGGTIGAVAVRVTM 60 Query: 61 IAFAVTMLQLPYLKLVGGILLLWIGIKLL---NEEDEHTDINGSD-RLWGAVKTVIVADL 116 V +L +P L LVGG+LL+WI KLL EE ++GS LW A++T+IVAD Sbjct: 61 TLAIVWLLNVPGLLLVGGLLLVWIAYKLLAPVREEKSAVHLSGSRIGLWAAIRTIIVADA 120 Query: 117 VMSLDNVIAIASAAEQAAGEHQLLLVVFGIVVSIPIIVWGSTLVLKLMEKFPVIVTLGAA 176 VM LDNV+ +A AA+ GE +LV+ G+++SIPI++ GSTL+LK +E++PVI+ LGAA Sbjct: 121 VMGLDNVLGVAGAAQ---GE--FMLVIVGLLISIPIMIVGSTLILKWVERYPVIIYLGAA 175 Query: 177 LLGYIAGGMIFSDAAMQAWLRDVIAETEFILPGAAVHLSLPGLVGALGVVLTGL--TLKR 234 +L + A MI + M + + F L L L+G GVVL+GL Sbjct: 176 VLAWTAAKMIGQEPVMN----EFFGQNPFFL-----WLLYGLLIG--GVVLSGLLRNAPW 224 Query: 235 RKAEQQHTP 243 + +++ TP Sbjct: 225 KPTQREGTP 233 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.142 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 287,142 Number of extensions: 6679 Number of successful extensions: 53 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 4 Length of query: 245 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 166 Effective length of database: 740,042 Effective search space: 122846972 Effective search space used: 122846972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)