BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0622.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093622|ref|YP_001098697.1| succinyl-CoA synthetase subunit...   486   e-139

>gi|134093622|ref|YP_001098697.1| succinyl-CoA synthetase subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  486 bits (1250), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 258/293 (88%), Gaps = 2/293 (0%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60
           MSILINKDTKVITQGITGKTGQFHTRMC +YANGKN FVAGVNPKK GE FEG+PIYA+V
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTRMCIEYANGKNCFVAGVNPKKPGESFEGVPIYASV 60

Query: 61  TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120
            EAK  TGATVSVIYVPP  AAAAI EAV+A +DL ICITEGIPVRDM+  K RM   G 
Sbjct: 61  AEAKAETGATVSVIYVPPPFAAAAIDEAVDAGIDLVICITEGIPVRDMIRTKARME--GK 118

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEA GQL   GLGQS+ 
Sbjct: 119 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAAGQLAEFGLGQSTV 178

Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240
           VGIGGDP++GLKHID+++ FNDDPDTDAVIM+GEIGG  E   ARWIKDNMKKPVVGFIA
Sbjct: 179 VGIGGDPVSGLKHIDILRMFNDDPDTDAVIMVGEIGGDAEETCARWIKDNMKKPVVGFIA 238

Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293
           GVTAP GKRMGHAGA+ISGG  TA+ KLA+ME CGIKVTRNP+EMGRLLKSVL
Sbjct: 239 GVTAPEGKRMGHAGAIISGGKGTAQEKLAVMEACGIKVTRNPAEMGRLLKSVL 291


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 558,005
Number of extensions: 23634
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)