BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0621.p
         (386 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093621|ref|YP_001098696.1| succinyl-CoA synthetase subunit...   602   e-173

>gi|134093621|ref|YP_001098696.1| succinyl-CoA synthetase subunit
           beta [Herminiimonas arsenicoxydans]
          Length = 388

 Score =  602 bits (1551), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/386 (78%), Positives = 343/386 (88%)

Query: 1   MKIHEYQGKEILRQFGVTVPRGIPCMSVDEVEAAAQKLGGPVWVVKAQIHAGGRGKGGGV 60
           M IHEYQGKEILR++GVT P+G PC SVDE   AA+KLGG VWVVKAQIHAGGRGKGGGV
Sbjct: 1   MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKLGGKVWVVKAQIHAGGRGKGGGV 60

Query: 61  KVAKSIEQVKEYANQIMGMQLVTHQTGPEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120
           KVAKS+++V++YAN I+GM LVTHQTGPEG+ V+RLLIEEGADIKKELYV +V DR SQ+
Sbjct: 61  KVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQR 120

Query: 121 VVLMASSEGGMDIEEVAHSHPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180
           V LMASSEGGMDIE VA   PEKIH V IDP  GL D++ADD+A KIGVP  SIP AR  
Sbjct: 121 VALMASSEGGMDIEHVAEHTPEKIHKVFIDPFKGLLDSEADDIARKIGVPEGSIPQARAF 180

Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240
           +QGLYKA+ ETDASLAEINPLI+TGD +++ALDAKFNFDSNAL+RHPEIV  RDLDEEDP
Sbjct: 181 MQGLYKAFDETDASLAEINPLIVTGDDRIVALDAKFNFDSNALYRHPEIVEMRDLDEEDP 240

Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300
           AE+EASKFDL YISLDGNIGCLVNGAGLAMATMD IKL+GG PANFLDVGGGATTEKVTE
Sbjct: 241 AEIEASKFDLTYISLDGNIGCLVNGAGLAMATMDVIKLYGGSPANFLDVGGGATTEKVTE 300

Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360
           AFKIMLKNP++KAILVNIFGGIM+CDVIA+GVIAA+K V L VPLVVRM GTNE+LGKK+
Sbjct: 301 AFKIMLKNPDIKAILVNIFGGIMKCDVIAQGVIAAAKQVDLTVPLVVRMAGTNEELGKKI 360

Query: 361 LADSGLPIISADSMEEAAQKVVAAAK 386
           LA+SGLPII+A++M EAA+KVV AA+
Sbjct: 361 LAESGLPIITANNMAEAAEKVVNAAQ 386


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 669,031
Number of extensions: 26678
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 303
Effective length of database: 726,862
Effective search space: 220239186
Effective search space used: 220239186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)