BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0619.p
         (154 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095795|ref|YP_001100870.1| RecX family regulatory protein ...   176   6e-46

>gi|134095795|ref|YP_001100870.1| RecX family regulatory protein
           [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  176 bits (445), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 1   MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           M +  +SLKARAL+YLS+REHSR ELARKLA YAQEGDDIEALL  LE + F+SE RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELARKLARYAQEGDDIEALLDTLEAANFMSEARFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIADLKADLAAGEGERAAQVLRRKFSAPPADAE 120
           SLV+RR+AR+GN RI SEL  H I+ +++ ++KA LA  E  RA +V  RKF    +DA 
Sbjct: 61  SLVNRRAARFGNSRILSELKSHNIDPDSLTEIKAALAQDEVARAREVWTRKFGVAASDAN 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQMAWAEDED 152
            RAKQMRFL QRGFSHR+I+ A + A  E+ED
Sbjct: 121 GRAKQMRFLLQRGFSHRAIQAAMR-AKEENED 151


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,828
Number of extensions: 7840
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 80
Effective length of database: 756,517
Effective search space: 60521360
Effective search space used: 60521360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)