BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0618.p
         (350 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095796|ref|YP_001100871.1| recombinase A [Herminiimonas ar...   632   0.0  

>gi|134095796|ref|YP_001100871.1| recombinase A [Herminiimonas
           arsenicoxydans]
          Length = 367

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/341 (90%), Positives = 330/341 (96%)

Query: 1   MDDKKAANNSEKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGI 60
           MDDKK A +S+KSKALAAALAQIEKQFGKGSVMRMEDG + EE+Q VSTGSLGLD+ALG+
Sbjct: 1   MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRMEDGAVVEEVQVVSTGSLGLDLALGV 60

Query: 61  GGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLND 120
           GGLPRGRV+EIYGPESSGKTTLTLQ+IAEMQKLGGTCAFIDAEHALDVTYAQKLG+NL++
Sbjct: 61  GGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLSE 120

Query: 121 LLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 180
           LLISQPDTGEQALEICDALVRSG VDLIV+DSVAALTP+AEIEGDMGDSLPGLQARLMSQ
Sbjct: 121 LLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQ 180

Query: 181 ALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240
           ALRKLTGSINRTNT VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
Sbjct: 181 ALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240

Query: 241 GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSY 300
           GDEVIG+ETKVKVVKNK+APPF+EAHF+ILYGEGTSREGEILDLGS+ K+VEKSGAWYSY
Sbjct: 241 GDEVIGNETKVKVVKNKIAPPFKEAHFEILYGEGTSREGEILDLGSDAKIVEKSGAWYSY 300

Query: 301 NGERIGQGKDNARNYLKEHPELAREIENKVRVALGVPELAA 341
           NGERIGQGKDNARNYLKE PELAREIENKVR +LGVPEL A
Sbjct: 301 NGERIGQGKDNARNYLKERPELAREIENKVRASLGVPELGA 341


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 543,627
Number of extensions: 21498
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 267
Effective length of database: 726,862
Effective search space: 194072154
Effective search space used: 194072154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)